Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LIT30_RS08880 Genome accession   NZ_CP085426
Coordinates   1750252..1751277 (-) Length   341 a.a.
NCBI ID   WP_013056446.1    Uniprot ID   -
Organism   Priestia megaterium strain F16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1745252..1756277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT30_RS08860 (LIT30_08860) - 1745665..1746471 (+) 807 WP_013056442.1 carbon-nitrogen family hydrolase -
  LIT30_RS08865 (LIT30_08865) - 1747040..1747633 (+) 594 WP_013056443.1 hypothetical protein -
  LIT30_RS08870 (LIT30_08870) speG 1747926..1748450 (-) 525 WP_013056444.1 spermidine N1-acetyltransferase -
  LIT30_RS08875 (LIT30_08875) - 1748626..1749948 (+) 1323 WP_055990424.1 DUF1565 domain-containing protein -
  LIT30_RS08880 (LIT30_08880) recA 1750252..1751277 (-) 1026 WP_013056446.1 recombinase RecA Machinery gene
  LIT30_RS08885 (LIT30_08885) - 1751274..1751468 (-) 195 WP_055990421.1 hypothetical protein -
  LIT30_RS08890 (LIT30_08890) arsC 1751771..1752193 (-) 423 WP_013056447.1 arsenate reductase (thioredoxin) -
  LIT30_RS08895 (LIT30_08895) - 1752218..1753516 (-) 1299 WP_013056448.1 arsenical efflux pump membrane protein ArsB -
  LIT30_RS08900 (LIT30_08900) - 1753535..1753882 (-) 348 WP_013056449.1 metalloregulator ArsR/SmtB family transcription factor -
  LIT30_RS08905 (LIT30_08905) - 1754290..1754619 (+) 330 WP_029324433.1 metalloregulator ArsR/SmtB family transcription factor -
  LIT30_RS08910 (LIT30_08910) - 1754670..1755104 (+) 435 WP_013056451.1 ArsI/CadI family heavy metal resistance metalloenzyme -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37328.51 Da        Isoelectric Point: 5.5759

>NTDB_id=618021 LIT30_RS08880 WP_013056446.1 1750252..1751277(-) (recA) [Priestia megaterium strain F16]
MNDKKAALDMALKQIEKQFGTGSIIKMGEGTHTKVEASSSGSLALDIALGINGYPKGRIMEVYGPESSGKTTVSLHAIAE
VQKNGGRAAFIDAEHALDPVYARKLGVDIDELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPQKEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKLGNDIVGNKT
RIKVVKNKMAPPFRIAEVDIMYGEGISKEGEILDIGSEVDIVQKSGSWFSYNEERLGQGRENAKIFLKENPEIREEIRKR
IIDFKYSDNVNNDNDSEKENQ

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=618021 LIT30_RS08880 WP_013056446.1 1750252..1751277(-) (recA) [Priestia megaterium strain F16]
ATGAATGATAAAAAAGCAGCACTAGATATGGCTCTAAAACAAATTGAAAAACAATTCGGTACAGGATCAATTATTAAAAT
GGGAGAAGGCACACATACAAAAGTTGAGGCATCTAGCTCAGGCTCATTAGCTTTAGATATAGCTCTTGGAATTAATGGTT
ATCCCAAGGGAAGAATTATGGAAGTTTACGGGCCCGAAAGTTCAGGTAAAACAACCGTTTCCTTACACGCAATTGCAGAA
GTACAAAAAAATGGAGGTCGAGCTGCCTTTATTGATGCTGAACACGCACTTGATCCGGTTTATGCAAGAAAACTAGGTGT
AGATATTGATGAGTTACTGTTATCTCAACCAGATACTGGTGAACAGGCACTTGAAATTGCTGAAGCATTAGTTAGAAGTG
GTGCTGTAGATATTATTGTTGTTGACTCAGTAGCAGCATTAGTTCCACAAAAAGAAATTGAAGGAGAAATGGGAGATTCT
CACGTAGGTTTACAAGCTCGTTTGATGTCTCAAGCTCTTCGTAAACTATCTGGAGCAATCAATAAGTCTAAAACCATTGC
CATCTTCATCAACCAAATCAGGGAGAAAGTAGGCGTTATGTTTGGAAATCCGGAAACAACGCCAGGTGGAAGAGCACTAA
AATTCTATTCTTCCGTTCGTCTGGAGGTTCGCCGCGCTGAACAACTAAAACTCGGAAATGACATAGTTGGTAATAAAACA
AGAATTAAAGTAGTCAAAAATAAAATGGCACCTCCTTTCCGCATTGCTGAAGTAGATATTATGTATGGAGAAGGTATCTC
AAAAGAAGGAGAAATCTTAGATATCGGCTCTGAAGTAGACATTGTTCAAAAGTCTGGATCTTGGTTTTCATATAATGAGG
AGCGTTTAGGACAGGGACGAGAAAACGCTAAGATTTTCTTAAAAGAAAACCCTGAAATTAGAGAAGAAATTAGAAAAAGA
ATTATTGATTTCAAATATAGTGATAATGTTAATAACGATAACGATAGCGAAAAAGAAAACCAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

82.979

96.481

0.801
  recA Latilactobacillus sakei subsp. sakei 23K

72.812

93.842

0.683
  recA Streptococcus mutans UA159

65.306

100

0.657
  recA Streptococcus pneumoniae Rx1

69.04

94.721

0.654
  recA Streptococcus pneumoniae D39

69.04

94.721

0.654
  recA Streptococcus pneumoniae R6

69.04

94.721

0.654
  recA Streptococcus pneumoniae TIGR4

69.04

94.721

0.654
  recA Streptococcus mitis NCTC 12261

68.731

94.721

0.651
  recA Streptococcus mitis SK321

68.421

94.721

0.648
  recA Streptococcus pyogenes NZ131

67.593

95.015

0.642
  recA Acinetobacter baylyi ADP1

61.919

100

0.625
  recA Neisseria gonorrhoeae strain FA1090

62.099

100

0.625
  recA Neisseria gonorrhoeae MS11

62.099

100

0.625
  recA Neisseria gonorrhoeae MS11

62.099

100

0.625
  recA Lactococcus lactis subsp. cremoris KW2

66.458

93.548

0.622
  recA Acinetobacter baumannii D1279779

64.577

93.548

0.604
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.95

93.548

0.598
  recA Vibrio cholerae strain A1552

63.95

93.548

0.598
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.24

94.135

0.595
  recA Helicobacter pylori strain NCTC11637

63.125

93.842

0.592
  recA Glaesserella parasuis strain SC1401

63.522

93.255

0.592
  recA Helicobacter pylori 26695

62.813

93.842

0.589
  recA Pseudomonas stutzeri DSM 10701

63.009

93.548

0.589
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.656

95.601

0.589
  recA Ralstonia pseudosolanacearum GMI1000

65.147

90.029

0.587
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.19

94.135

0.557