Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LHV56_RS08540 Genome accession   NZ_CP085397
Coordinates   1756608..1757654 (+) Length   348 a.a.
NCBI ID   WP_034313522.1    Uniprot ID   A0AAN2PG08
Organism   Peribacillus frigoritolerans strain KF3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1751608..1762654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LHV56_RS08515 (LHV56_08550) - 1752044..1752301 (+) 258 WP_053534398.1 DUF3243 domain-containing protein -
  LHV56_RS08520 (LHV56_08555) - 1752544..1753335 (+) 792 WP_034313530.1 DUF3388 domain-containing protein -
  LHV56_RS08525 (LHV56_08560) - 1753344..1754252 (+) 909 WP_319023470.1 RodZ family helix-turn-helix domain-containing protein -
  LHV56_RS08530 (LHV56_08565) pgsA 1754418..1755002 (+) 585 WP_034313524.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LHV56_RS08535 (LHV56_08570) cinA 1755025..1756257 (+) 1233 WP_034315395.1 competence/damage-inducible protein A Machinery gene
  LHV56_RS08540 (LHV56_08575) recA 1756608..1757654 (+) 1047 WP_034313522.1 recombinase RecA Machinery gene
  LHV56_RS08545 (LHV56_08580) rny 1758008..1759567 (+) 1560 WP_034313519.1 ribonuclease Y -
  LHV56_RS08550 (LHV56_08585) - 1759720..1760517 (+) 798 WP_048684720.1 TIGR00282 family metallophosphoesterase -
  LHV56_RS08555 (LHV56_08590) spoVS 1760691..1760951 (+) 261 WP_029281188.1 stage V sporulation protein SpoVS -
  LHV56_RS08560 (LHV56_08595) - 1761086..1762018 (+) 933 WP_095389870.1 dipeptidase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38065.09 Da        Isoelectric Point: 4.7334

>NTDB_id=617610 LHV56_RS08540 WP_034313522.1 1756608..1757654(+) (recA) [Peribacillus frigoritolerans strain KF3]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQTDRRISTISSGSLALDVALGVGGYPRGRVIEIYGPESSGKTTVALHAIAE
VQKTGGTAAFIDAEHALDPAYSEKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDS
HMGLQARMMSQALRKLSGSINKSNTIAIFINQVREKIGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNEIVGNKT
KIKVVKNKVAPPFRQAEVDIMYGQGISQEGEIIDMGADLDIVLKSGSWYSYNEERVGQGRENAKLFLKENQDIAQEISQK
IRDHYNLDGEHELPPEENETEEHFELLD

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=617610 LHV56_RS08540 WP_034313522.1 1756608..1757654(+) (recA) [Peribacillus frigoritolerans strain KF3]
GTGAGTGATCGTCAAGCGGCTTTAGATATGGCGTTAAAACAAATTGAGAAACAATTTGGTAAAGGTTCGATTATGAAACT
TGGGGAACAGACTGATCGTAGGATTTCAACGATCTCAAGCGGTTCTTTAGCATTGGACGTAGCGTTGGGAGTGGGCGGAT
ATCCAAGAGGCCGGGTCATTGAGATATATGGACCTGAAAGCTCCGGTAAAACGACTGTAGCATTACATGCCATTGCAGAG
GTACAAAAGACTGGCGGGACGGCTGCATTCATTGATGCCGAGCATGCTTTAGATCCAGCATATTCAGAAAAACTTGGTGT
GAATATCGATGAGTTACTGCTTTCACAGCCTGATACGGGTGAACAAGCCTTAGAGATCGCTGAAGCTCTAGTTCGAAGCG
GAGCGGTAGATATCATTGTCATTGACTCGGTGGCAGCGCTTGTTCCTAAAGCTGAAATCGAAGGCGAAATGGGAGATTCC
CATATGGGTCTTCAAGCCCGGATGATGTCTCAGGCACTTAGAAAACTGTCTGGTTCCATTAATAAATCAAATACCATTGC
CATTTTCATTAACCAAGTCCGTGAAAAAATCGGTGTTATGTTTGGAAATCCAGAAACGACTCCGGGAGGCCGGGCATTGA
AGTTCTATTCAACTGTTCGTCTGGAAGTGCGCCGTGCGGAGCAATTAAAACAAGGTAATGAAATCGTGGGTAATAAAACG
AAAATCAAAGTTGTAAAAAACAAGGTTGCTCCACCATTCCGCCAAGCAGAAGTTGACATCATGTATGGTCAAGGGATTTC
ACAGGAAGGTGAAATCATCGATATGGGTGCAGACCTTGATATCGTCCTTAAAAGCGGCTCATGGTATTCATACAATGAAG
AGCGTGTCGGACAAGGCCGTGAAAATGCGAAGCTGTTCCTGAAAGAAAATCAGGATATCGCTCAGGAAATTTCTCAGAAA
ATCAGAGATCACTATAATCTTGATGGAGAGCATGAATTACCACCAGAAGAAAATGAAACAGAAGAGCATTTTGAATTGCT
TGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

85.671

94.253

0.807
  recA Latilactobacillus sakei subsp. sakei 23K

72.861

97.414

0.71
  recA Streptococcus mutans UA159

65.517

100

0.655
  recA Streptococcus pneumoniae TIGR4

67.761

96.264

0.652
  recA Streptococcus mitis NCTC 12261

67.761

96.264

0.652
  recA Streptococcus pneumoniae Rx1

67.761

96.264

0.652
  recA Streptococcus pneumoniae D39

67.761

96.264

0.652
  recA Streptococcus pneumoniae R6

67.761

96.264

0.652
  recA Streptococcus mitis SK321

65.988

98.851

0.652
  recA Streptococcus pyogenes NZ131

67.584

93.966

0.635
  recA Lactococcus lactis subsp. cremoris KW2

64.881

96.552

0.626
  recA Ralstonia pseudosolanacearum GMI1000

68.69

89.943

0.618
  recA Vibrio cholerae strain A1552

66.355

92.241

0.612
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.355

92.241

0.612
  recA Neisseria gonorrhoeae MS11

66.044

92.241

0.609
  recA Neisseria gonorrhoeae MS11

66.044

92.241

0.609
  recA Neisseria gonorrhoeae strain FA1090

66.044

92.241

0.609
  recA Acinetobacter baylyi ADP1

60.983

99.425

0.606
  recA Acinetobacter baumannii D1279779

61.337

98.851

0.606
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.415

94.253

0.598
  recA Helicobacter pylori strain NCTC11637

60.465

98.851

0.598
  recA Helicobacter pylori 26695

60.465

98.851

0.598
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.997

93.966

0.592
  recA Pseudomonas stutzeri DSM 10701

64.062

91.954

0.589
  recA Glaesserella parasuis strain SC1401

63.75

91.954

0.586
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.875

91.954

0.569