Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LIN44_RS15080 Genome accession   NZ_CP085344
Coordinates   3280475..3281539 (-) Length   354 a.a.
NCBI ID   WP_227312766.1    Uniprot ID   -
Organism   Cupriavidus sp. MP-37     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3275475..3286539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIN44_RS15055 (LIN44_15055) - 3275889..3276584 (-) 696 WP_227312762.1 TerC family protein -
  LIN44_RS15060 (LIN44_15060) sucD 3276821..3277702 (-) 882 WP_209768154.1 succinate--CoA ligase subunit alpha -
  LIN44_RS15065 (LIN44_15065) sucC 3277791..3278957 (-) 1167 WP_227312763.1 ADP-forming succinate--CoA ligase subunit beta -
  LIN44_RS15070 (LIN44_15070) - 3279047..3279754 (-) 708 WP_227312764.1 DUF2889 domain-containing protein -
  LIN44_RS15075 (LIN44_15075) recX 3279906..3280382 (-) 477 WP_227312765.1 recombination regulator RecX -
  LIN44_RS15080 (LIN44_15080) recA 3280475..3281539 (-) 1065 WP_227312766.1 recombinase RecA Machinery gene
  LIN44_RS15085 (LIN44_15085) - 3281775..3282464 (+) 690 WP_012351826.1 response regulator transcription factor -
  LIN44_RS15090 (LIN44_15090) - 3282513..3284060 (+) 1548 WP_227312767.1 sensor histidine kinase -
  LIN44_RS15095 (LIN44_15095) - 3284057..3284389 (+) 333 WP_227312768.1 DUF4212 domain-containing protein -
  LIN44_RS15100 (LIN44_15100) - 3284637..3286334 (+) 1698 WP_227312769.1 MFS transporter -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37580.06 Da        Isoelectric Point: 5.0426

>NTDB_id=617235 LIN44_RS15080 WP_227312766.1 3280475..3281539(-) (recA) [Cupriavidus sp. MP-37]
MDDKKAGAGVSAEKQKALAAALSQIEKQFGKGSIMRLGDGEVEKDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESSG
KTTLTLQVVAEMQKLGGTCAFIDAEHALDVNYASKLGVNVGDLLISQPDTGEQALEITDALVRSGSIDLIVIDSVAALVP
KAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSI
KKGDDVIGNETKVKVVKNKVSPPFREAFFDILYGQGISRQGEIIDLGVDAKIVEKSGAWYSYNGEKIGQGKDNAREYLRE
NPDIADEIENKVRAALGVVAMNPTAAAAAATIED

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=617235 LIN44_RS15080 WP_227312766.1 3280475..3281539(-) (recA) [Cupriavidus sp. MP-37]
ATGGACGACAAGAAGGCAGGTGCCGGCGTGAGCGCCGAGAAGCAAAAGGCGCTTGCCGCCGCGCTCTCCCAGATCGAGAA
GCAGTTCGGCAAGGGCTCGATCATGCGCCTGGGCGACGGCGAGGTCGAAAAGGACATCCAGGTGGTTTCCACCGGTTCGC
TCGGCCTGGATATCGCGCTTGGCGTCGGTGGCCTGCCGCGCGGCCGCGTGGTCGAGATCTACGGGCCGGAATCCTCGGGC
AAGACCACGCTGACGCTGCAGGTCGTGGCCGAGATGCAGAAGCTGGGCGGCACCTGCGCCTTTATCGATGCCGAGCACGC
GCTGGACGTCAACTACGCTTCCAAGCTCGGCGTCAATGTCGGCGACCTGCTGATCTCGCAGCCCGACACCGGCGAGCAGG
CCCTGGAAATCACCGACGCGCTGGTGCGCTCGGGCTCGATCGACCTGATCGTGATCGACTCGGTCGCCGCGCTGGTGCCC
AAGGCCGAAATCGAAGGCGAAATGGGCGATTCGCTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCT
GACCGGCACCATCAAGCGCACCAACTGCCTGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCT
CGCCCGAAACCACCACCGGCGGCAATGCGCTGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCATCGGCTCGATC
AAGAAGGGCGATGACGTGATCGGCAACGAGACCAAGGTCAAGGTGGTCAAGAACAAGGTGTCGCCGCCGTTCCGCGAGGC
CTTCTTCGACATCCTCTACGGGCAGGGCATCTCGCGCCAGGGCGAGATCATCGACCTGGGCGTCGATGCCAAGATCGTCG
AGAAGTCGGGCGCCTGGTACAGCTACAACGGCGAGAAGATCGGCCAGGGCAAGGACAACGCCCGCGAATACCTGCGCGAG
AACCCGGACATCGCCGACGAGATCGAAAACAAGGTGCGCGCGGCGCTGGGCGTGGTGGCCATGAACCCCACGGCCGCAGC
CGCGGCGGCCACGATCGAAGACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(16-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

86.455

98.023

0.847
  recA Pseudomonas stutzeri DSM 10701

73.314

96.328

0.706
  recA Acinetobacter baylyi ADP1

73.574

94.068

0.692
  recA Neisseria gonorrhoeae MS11

74.468

92.938

0.692
  recA Neisseria gonorrhoeae MS11

74.468

92.938

0.692
  recA Neisseria gonorrhoeae strain FA1090

74.468

92.938

0.692
  recA Acinetobacter baumannii D1279779

70.968

96.328

0.684
  recA Glaesserella parasuis strain SC1401

70.92

95.198

0.675
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.424

93.22

0.675
  recA Vibrio cholerae strain A1552

72.424

93.22

0.675
  recA Helicobacter pylori 26695

65.653

92.938

0.61
  recA Helicobacter pylori strain NCTC11637

65.35

92.938

0.607
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.35

92.938

0.607
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.35

92.938

0.607
  recA Latilactobacillus sakei subsp. sakei 23K

65.337

92.09

0.602
  recA Bacillus subtilis subsp. subtilis str. 168

64.832

92.373

0.599
  recA Lactococcus lactis subsp. cremoris KW2

62.651

93.785

0.588
  recA Streptococcus mutans UA159

61.31

94.915

0.582
  recA Streptococcus mitis NCTC 12261

62.048

93.785

0.582
  recA Streptococcus pyogenes NZ131

59.249

97.74

0.579
  recA Streptococcus pneumoniae Rx1

61.747

93.785

0.579
  recA Streptococcus pneumoniae D39

61.747

93.785

0.579
  recA Streptococcus pneumoniae R6

61.747

93.785

0.579
  recA Streptococcus pneumoniae TIGR4

61.747

93.785

0.579
  recA Streptococcus mitis SK321

61.446

93.785

0.576
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.769

91.808

0.576