Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LG274_RS11880 Genome accession   NZ_CP085253
Coordinates   2548030..2549094 (+) Length   354 a.a.
NCBI ID   WP_248115244.1    Uniprot ID   -
Organism   Micrococcus antarcticus strain ABH-515     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2543030..2554094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG274_RS11860 (LG274_11890) - 2545814..2546443 (+) 630 WP_404464654.1 CDP-alcohol phosphatidyltransferase family protein -
  LG274_RS11865 (LG274_11895) - 2546440..2546934 (+) 495 WP_248115246.1 CinA family protein -
  LG274_RS11870 (LG274_11900) - 2547161..2547475 (+) 315 WP_248115324.1 helix-turn-helix transcriptional regulator -
  LG274_RS11875 (LG274_11905) - 2547607..2547825 (+) 219 WP_248115245.1 DUF3046 domain-containing protein -
  LG274_RS11880 (LG274_11910) recA 2548030..2549094 (+) 1065 WP_248115244.1 recombinase RecA Machinery gene
  LG274_RS11885 (LG274_11915) - 2549094..2550011 (+) 918 WP_404464658.1 regulatory protein RecX -
  LG274_RS11890 (LG274_11920) miaB 2550096..2551550 (+) 1455 WP_404466077.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  LG274_RS11895 (LG274_11925) miaA 2551553..2552479 (+) 927 WP_404466080.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  LG274_RS11900 (LG274_11930) dapF 2552490..2553431 (+) 942 WP_404464660.1 diaminopimelate epimerase -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37703.04 Da        Isoelectric Point: 5.1666

>NTDB_id=616496 LG274_RS11880 WP_248115244.1 2548030..2549094(+) (recA) [Micrococcus antarcticus strain ABH-515]
MSNVTDREKALEAALAQIDKQFGKGSVMRLGDQTQAPVEVIPTGSVAMDVALGIGGLPRGRVVEIYGPESSGKTTLALHA
VANAQRNGGIAAFIDAEHALDPAYARKLGVDTDALLVSQPDTGEQALEIMDMLVSSGTLDIVVIDSVAALTPRAEIEGEM
GDSHVGLQARLMSQALRKITGRLHQTKTTAIFINQLREKIGVFFGSPETTTGGKALKFYASVRIDVRRIETLKEGGNPVG
NRTRVKIVKNKMAPPFKQAEFDILYGVGISREGGLIDMGVEEGIVKKSGAWFTYDGDQLGQGKENARRFLKDNPDLALEI
EQRILTKLGIGVDPEAAEEDGAPVLAAVAGDTKA

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=616496 LG274_RS11880 WP_248115244.1 2548030..2549094(+) (recA) [Micrococcus antarcticus strain ABH-515]
ATGAGCAACGTGACGGATCGTGAGAAGGCCCTCGAGGCGGCACTGGCCCAGATCGACAAGCAGTTCGGCAAGGGCTCCGT
CATGCGCCTGGGCGATCAGACCCAGGCGCCGGTGGAGGTCATCCCGACCGGCTCGGTGGCCATGGACGTGGCCCTGGGCA
TCGGCGGCCTCCCGCGGGGGCGCGTCGTGGAGATCTATGGCCCGGAGTCCTCGGGCAAGACCACGCTCGCCCTGCACGCG
GTGGCCAACGCCCAGCGCAACGGCGGCATCGCGGCGTTCATCGACGCGGAGCACGCGCTGGACCCGGCCTACGCCCGCAA
GCTCGGCGTGGACACGGACGCGCTGCTGGTCAGCCAGCCGGACACGGGCGAGCAGGCCCTTGAGATCATGGACATGCTGG
TCTCCTCCGGCACCCTGGACATCGTCGTCATCGACTCCGTGGCGGCCCTGACGCCGCGCGCGGAGATCGAGGGCGAGATG
GGCGACTCCCACGTGGGTCTCCAGGCCCGCCTGATGTCCCAGGCGCTGCGCAAGATCACCGGCCGCCTGCACCAGACCAA
GACCACCGCCATCTTCATCAACCAGCTGCGCGAGAAGATCGGCGTGTTCTTCGGCTCCCCGGAGACCACCACCGGCGGCA
AGGCCCTCAAGTTCTACGCCTCCGTGCGCATCGACGTGCGCCGCATCGAGACGCTGAAGGAGGGCGGCAACCCCGTCGGC
AACCGCACGCGCGTCAAGATCGTGAAGAACAAGATGGCCCCGCCCTTCAAGCAGGCCGAGTTCGACATCCTCTACGGGGT
GGGCATCTCCCGTGAGGGTGGGCTGATCGACATGGGCGTCGAGGAGGGCATCGTCAAGAAGTCCGGCGCCTGGTTCACGT
ACGACGGGGACCAGCTGGGCCAGGGCAAGGAGAACGCCCGCCGGTTCCTCAAGGACAACCCGGACCTGGCCCTCGAGATC
GAGCAGCGCATCCTCACGAAGCTCGGCATCGGCGTGGACCCGGAGGCCGCCGAGGAGGACGGGGCGCCGGTCCTCGCGGC
CGTGGCGGGTGACACCAAGGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

65.951

92.09

0.607
  recA Pseudomonas stutzeri DSM 10701

66.563

91.243

0.607
  recA Acinetobacter baumannii D1279779

66.254

91.243

0.605
  recA Neisseria gonorrhoeae MS11

66.562

90.395

0.602
  recA Neisseria gonorrhoeae strain FA1090

66.562

90.395

0.602
  recA Neisseria gonorrhoeae MS11

66.562

90.395

0.602
  recA Bacillus subtilis subsp. subtilis str. 168

64.526

92.373

0.596
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.939

93.22

0.596
  recA Vibrio cholerae strain A1552

63.939

93.22

0.596
  recA Glaesserella parasuis strain SC1401

60.519

98.023

0.593
  recA Ralstonia pseudosolanacearum GMI1000

66.773

88.418

0.59
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.497

92.09

0.585
  recA Helicobacter pylori 26695

63.692

91.808

0.585
  recA Helicobacter pylori strain NCTC11637

63.692

91.808

0.585
  recA Latilactobacillus sakei subsp. sakei 23K

62.424

93.22

0.582
  recA Lactococcus lactis subsp. cremoris KW2

61.012

94.915

0.579
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.31

92.938

0.579
  recA Streptococcus mitis SK321

60.237

95.198

0.573
  recA Streptococcus mitis NCTC 12261

59.941

95.198

0.571
  recA Streptococcus pneumoniae Rx1

59.292

95.763

0.568
  recA Streptococcus pneumoniae D39

59.292

95.763

0.568
  recA Streptococcus pneumoniae R6

59.292

95.763

0.568
  recA Streptococcus pneumoniae TIGR4

59.292

95.763

0.568
  recA Streptococcus pyogenes NZ131

61.28

92.655

0.568
  recA Streptococcus mutans UA159

60.182

92.938

0.559
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.308

93.503

0.545