Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LG330_RS09185 Genome accession   NZ_CP085252
Coordinates   1702230..1703282 (+) Length   350 a.a.
NCBI ID   WP_404409289.1    Uniprot ID   -
Organism   Jeotgalibacillus malaysiensis strain ABH-525     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1697230..1708282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG330_RS09160 (LG330_09110) - 1697948..1698205 (+) 258 WP_404409279.1 DUF3243 domain-containing protein -
  LG330_RS09165 (LG330_09115) - 1698350..1699141 (+) 792 WP_404409281.1 YmfK family protein -
  LG330_RS09170 (LG330_09120) - 1699161..1700051 (+) 891 WP_404409283.1 helix-turn-helix domain-containing protein -
  LG330_RS09175 (LG330_09125) pgsA 1700168..1700746 (+) 579 WP_404409285.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LG330_RS09180 (LG330_09130) cinA 1700759..1702027 (+) 1269 WP_404409287.1 competence/damage-inducible protein A Machinery gene
  LG330_RS09185 (LG330_09135) recA 1702230..1703282 (+) 1053 WP_404409289.1 recombinase RecA Machinery gene
  LG330_RS09190 (LG330_09140) rny 1703513..1705072 (+) 1560 WP_404409291.1 ribonuclease Y -
  LG330_RS09195 (LG330_09145) - 1705206..1705997 (+) 792 WP_404409293.1 TIGR00282 family metallophosphoesterase -
  LG330_RS09200 (LG330_09150) - 1706097..1706357 (+) 261 WP_404409295.1 stage V sporulation protein S -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 38009.10 Da        Isoelectric Point: 5.0079

>NTDB_id=616462 LG330_RS09185 WP_404409289.1 1702230..1703282(+) (recA) [Jeotgalibacillus malaysiensis strain ABH-525]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQTDRRVNTVSSGSVSLDAALGVGGYPRGRVIEIYGPESSGKTTVALHAIAE
VQANGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVEIVIIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAISKSNTIAIFINQIREKVGVMFGSPETTPGGRALKFYSSVRLDVRRAETLKQGNDMVGNKT
RIKVVKNKVAPPFRIAEVDIMYGEGISKEGEIIDLGAEADIVQKSGSWYSYEGERLGQGRENAKQFLKENTELRQQILLK
IREHHGMDQPHAAPESEKEEAEEFDLLEDK

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=616462 LG330_RS09185 WP_404409289.1 1702230..1703282(+) (recA) [Jeotgalibacillus malaysiensis strain ABH-525]
GTGAGTGATCGTCAGGCAGCGCTGGATATGGCGCTTAAACAAATAGAAAAACAGTTCGGAAAAGGTTCAATCATGAAGCT
TGGAGAACAGACGGACAGAAGAGTAAATACAGTATCAAGCGGATCTGTCTCATTAGATGCAGCACTTGGGGTAGGCGGAT
ATCCACGAGGCCGTGTAATCGAGATTTATGGTCCTGAAAGCTCAGGTAAAACGACTGTAGCGCTTCATGCAATTGCTGAG
GTTCAGGCGAATGGCGGCCAGGCTGCTTTTATCGATGCTGAACACGCCCTTGATCCTGTATATGCTCAGAAGTTGGGTGT
TAATATAGATGAACTTCTTTTATCACAGCCGGACACAGGAGAGCAGGCACTCGAAATTGCAGAGGCACTTGTGCGGAGTG
GAGCGGTTGAAATTGTCATCATTGACTCAGTAGCAGCCCTTGTACCAAAAGCGGAAATTGAAGGTGAAATGGGTGATTCA
CACGTTGGTCTTCAGGCGCGTCTGATGTCTCAGGCGCTTAGAAAACTATCAGGTGCAATCAGTAAGTCTAATACAATCGC
AATCTTTATTAACCAGATTCGTGAAAAAGTCGGTGTTATGTTCGGAAGCCCGGAAACAACGCCGGGTGGTCGCGCACTGA
AGTTCTATTCTTCAGTCCGCCTCGATGTGCGCCGTGCTGAAACACTTAAGCAGGGTAACGATATGGTCGGAAACAAAACG
CGTATTAAAGTCGTTAAAAATAAAGTTGCACCGCCATTCCGTATTGCAGAAGTTGATATCATGTATGGTGAAGGGATCTC
TAAAGAAGGAGAGATCATTGACCTTGGTGCTGAAGCGGATATCGTTCAAAAGAGCGGATCTTGGTATTCATATGAAGGAG
AGCGTCTCGGACAGGGACGTGAAAATGCAAAGCAGTTCCTGAAAGAAAATACTGAACTCCGTCAGCAGATTCTCCTGAAG
ATCCGTGAGCATCACGGTATGGATCAGCCGCATGCTGCGCCTGAAAGTGAAAAGGAAGAAGCGGAAGAATTTGATCTGCT
AGAAGATAAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

87.5

93.714

0.82
  recA Latilactobacillus sakei subsp. sakei 23K

70.487

99.714

0.703
  recA Streptococcus mitis SK321

64.368

99.429

0.64
  recA Streptococcus mitis NCTC 12261

64.368

99.429

0.64
  recA Streptococcus pneumoniae TIGR4

63.456

100

0.64
  recA Streptococcus pneumoniae Rx1

63.456

100

0.64
  recA Streptococcus pneumoniae D39

63.456

100

0.64
  recA Streptococcus pneumoniae R6

63.456

100

0.64
  recA Streptococcus mutans UA159

63.068

100

0.634
  recA Ralstonia pseudosolanacearum GMI1000

67.791

93.143

0.631
  recA Streptococcus pyogenes NZ131

66.159

93.714

0.62
  recA Lactococcus lactis subsp. cremoris KW2

65.455

94.286

0.617
  recA Neisseria gonorrhoeae strain FA1090

66.055

93.429

0.617
  recA Neisseria gonorrhoeae MS11

66.055

93.429

0.617
  recA Neisseria gonorrhoeae MS11

66.055

93.429

0.617
  recA Acinetobacter baylyi ADP1

60.745

99.714

0.606
  recA Helicobacter pylori 26695

61.988

97.714

0.606
  recA Helicobacter pylori strain NCTC11637

61.988

97.714

0.606
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.404

97.714

0.6
  recA Acinetobacter baumannii D1279779

60.87

98.571

0.6
  recA Vibrio cholerae strain A1552

65.421

91.714

0.6
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.421

91.714

0.6
  recA Glaesserella parasuis strain SC1401

59.249

98.857

0.586
  recA Pseudomonas stutzeri DSM 10701

64.062

91.429

0.586
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.385

93.429

0.583
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.658

90.286

0.566