Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LG312_RS06795 Genome accession   NZ_CP085221
Coordinates   1480909..1481973 (-) Length   354 a.a.
NCBI ID   WP_379758257.1    Uniprot ID   -
Organism   Halomonas sp. strain DBC-59     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1475909..1486973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG312_RS06775 (LG312_06790) csrA 1475922..1476119 (-) 198 WP_379758269.1 carbon storage regulator CsrA -
  LG312_RS06780 (LG312_06795) - 1476319..1477569 (-) 1251 WP_404298876.1 aspartate kinase -
  LG312_RS06785 (LG312_06800) alaS 1477675..1480287 (-) 2613 WP_404298879.1 alanine--tRNA ligase -
  LG312_RS06790 (LG312_06805) - 1480399..1480905 (-) 507 WP_404298881.1 regulatory protein RecX -
  LG312_RS06795 (LG312_06810) recA 1480909..1481973 (-) 1065 WP_379758257.1 recombinase RecA Machinery gene
  LG312_RS06800 (LG312_06815) - 1482079..1482591 (-) 513 WP_379758254.1 CinA family protein -
  LG312_RS06805 (LG312_06820) mutS 1482697..1485273 (+) 2577 WP_404298884.1 DNA mismatch repair protein MutS -
  LG312_RS06810 (LG312_06825) fdxA 1485427..1485750 (+) 324 WP_379758248.1 ferredoxin FdxA -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38024.41 Da        Isoelectric Point: 5.0270

>NTDB_id=615980 LG312_RS06795 WP_379758257.1 1480909..1481973(-) (recA) [Halomonas sp. strain DBC-59]
MAQDDNRSKALNAALSQIERQFGKGTVMRLGDAPRVVMPSISTGSLGLDIALGIGGVPLGRVVEIFGPESSGKTTLSLSV
IAQAQKQGKTCAFIDAEHALDPSYAEKLGVNLDDLLVSQPDNGEQALEICDMLVRSGGVDVIVIDSVAALTPRAEIEGEM
GDSHVGLQARLMSQALRKITGNIKNANCMVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGSVKQGDEVTG
NETRVKVVKNKVAPPFRQAEFQILYGKGIYHAGEVVDLGVQCKLVDKAGAWYSYQGNKIGQGKANAAQFLEDNPAIMEEI
ESQIRTQLLAPVEPKKEDAKEAVPAENDRDDELL

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=615980 LG312_RS06795 WP_379758257.1 1480909..1481973(-) (recA) [Halomonas sp. strain DBC-59]
ATGGCTCAGGATGACAATCGCTCCAAGGCGCTGAATGCCGCGCTATCTCAGATTGAGCGCCAGTTTGGCAAGGGCACCGT
GATGCGTCTTGGCGACGCTCCACGCGTGGTCATGCCCTCGATCTCCACCGGCTCGCTGGGTCTCGATATCGCCCTGGGCA
TCGGTGGCGTACCGCTGGGTCGGGTGGTCGAGATCTTCGGTCCGGAGTCCTCGGGCAAGACCACCTTGTCACTGTCAGTG
ATTGCCCAGGCGCAGAAGCAGGGCAAGACCTGCGCCTTCATCGACGCCGAGCACGCATTGGATCCGAGCTACGCCGAGAA
GCTCGGCGTCAACCTGGATGACCTGCTGGTCTCCCAGCCCGATAACGGCGAGCAGGCCCTGGAGATCTGCGACATGCTGG
TGCGCTCCGGCGGCGTCGACGTGATTGTCATCGACTCGGTCGCGGCGCTGACACCTCGCGCCGAGATCGAGGGTGAAATG
GGCGACTCCCACGTCGGCCTGCAGGCCCGCTTGATGTCCCAGGCGCTGCGCAAGATCACCGGCAACATCAAGAATGCCAA
CTGCATGGTGGTATTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTTGGCAGCCCCGAGACCACCACCGGCGGTA
ACGCACTGAAGTTCTATGCCAGCGTGCGTCTGGACATTCGCCGCACCGGCTCGGTGAAGCAGGGCGACGAAGTCACCGGC
AACGAGACCCGCGTCAAGGTGGTCAAGAACAAGGTGGCCCCGCCGTTCCGACAGGCCGAGTTTCAGATCCTCTACGGCAA
GGGCATCTATCACGCCGGCGAGGTGGTAGATCTCGGCGTGCAGTGCAAGCTCGTCGACAAGGCCGGTGCCTGGTACAGCT
ACCAGGGCAACAAGATCGGCCAGGGCAAGGCCAATGCCGCCCAGTTCCTCGAGGATAATCCGGCCATCATGGAGGAGATC
GAGAGCCAGATCCGCACTCAGTTGCTCGCTCCGGTTGAGCCCAAGAAGGAAGATGCCAAGGAGGCGGTGCCCGCCGAGAA
CGACCGCGATGACGAGCTGCTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

80.982

92.09

0.746
  recA Acinetobacter baylyi ADP1

73.219

99.153

0.726
  recA Acinetobacter baumannii D1279779

76.38

92.09

0.703
  recA Vibrio cholerae strain A1552

71.951

92.655

0.667
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.951

92.655

0.667
  recA Glaesserella parasuis strain SC1401

70.988

91.525

0.65
  recA Neisseria gonorrhoeae MS11

70.807

90.96

0.644
  recA Neisseria gonorrhoeae MS11

70.807

90.96

0.644
  recA Neisseria gonorrhoeae strain FA1090

70.807

90.96

0.644
  recA Ralstonia pseudosolanacearum GMI1000

71.704

87.853

0.63
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.202

94.915

0.59
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.11

92.09

0.59
  recA Helicobacter pylori 26695

62.918

92.938

0.585
  recA Helicobacter pylori strain NCTC11637

62.31

92.938

0.579
  recA Streptococcus pneumoniae D39

55.464

100

0.573
  recA Streptococcus pneumoniae TIGR4

55.464

100

0.573
  recA Streptococcus pneumoniae R6

55.464

100

0.573
  recA Streptococcus pneumoniae Rx1

55.464

100

0.573
  recA Bacillus subtilis subsp. subtilis str. 168

62.5

90.395

0.565
  recA Streptococcus mutans UA159

57.184

98.305

0.562
  recA Streptococcus mitis NCTC 12261

59.509

92.09

0.548
  recA Streptococcus mitis SK321

59.202

92.09

0.545
  recA Streptococcus pyogenes NZ131

58.841

92.655

0.545
  recA Latilactobacillus sakei subsp. sakei 23K

59.077

91.808

0.542
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.41

92.373

0.54
  recA Lactococcus lactis subsp. cremoris KW2

56.347

91.243

0.514