Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   NQ602_RS09525 Genome accession   NZ_CP102174
Coordinates   2039707..2040036 (+) Length   109 a.a.
NCBI ID   WP_003091430.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PA5083     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2034707..2045036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQ602_RS09510 (NQ602_09510) - 2035446..2037443 (+) 1998 WP_021265047.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  NQ602_RS09515 (NQ602_09515) - 2037594..2039150 (-) 1557 WP_086250438.1 IS66 family transposase -
  NQ602_RS09520 (NQ602_09520) tnpB 2039169..2039528 (-) 360 WP_019437365.1 IS66 family insertion sequence element accessory protein TnpB -
  NQ602_RS09525 (NQ602_09525) comEA/comE1 2039707..2040036 (+) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  NQ602_RS09535 (NQ602_09535) - 2040253..2041449 (-) 1197 WP_003091428.1 amino acid aminotransferase -
  NQ602_RS09540 (NQ602_09540) uvrB 2041637..2043649 (+) 2013 WP_003091426.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=615845 NQ602_RS09525 WP_003091430.1 2039707..2040036(+) (comEA/comE1) [Pseudomonas aeruginosa strain PA5083]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=615845 NQ602_RS09525 WP_003091430.1 2039707..2040036(+) (comEA/comE1) [Pseudomonas aeruginosa strain PA5083]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGATG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385