Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | IUX27_RS05350 | Genome accession | NZ_CP085202 |
| Coordinates | 1117789..1118850 (+) | Length | 353 a.a. |
| NCBI ID | WP_000963143.1 | Uniprot ID | A0AAV3H3S5 |
| Organism | Shigella flexneri strain P099 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1110781..1160530 | 1117789..1118850 | within | 0 |
Gene organization within MGE regions
Location: 1110781..1160530
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IUX27_RS05305 (IUX27_05310) | gutQ | 1110781..1111746 (-) | 966 | WP_001287442.1 | arabinose-5-phosphate isomerase GutQ | - |
| IUX27_RS05310 (IUX27_05315) | srlR | 1111739..1112512 (-) | 774 | WP_000804545.1 | glucitol operon DNA-binding transcriptional repressor SrlR | - |
| IUX27_RS05315 (IUX27_05320) | gutM | 1112579..1112938 (-) | 360 | WP_000252901.1 | transcriptional regulator GutM | - |
| IUX27_RS05320 (IUX27_05325) | srlD | 1113043..1113822 (-) | 780 | WP_001077344.1 | sorbitol-6-phosphate dehydrogenase | - |
| IUX27_RS05325 (IUX27_05330) | srlB | 1113826..1114197 (-) | 372 | WP_000216201.1 | PTS glucitol/sorbitol transporter subunit IIA | - |
| IUX27_RS05330 (IUX27_05335) | srlE | 1114208..1115167 (-) | 960 | WP_000196934.1 | PTS glucitol/sorbitol transporter subunit IIB | - |
| IUX27_RS05335 (IUX27_05340) | srlA | 1115164..1115726 (-) | 563 | Protein_1029 | PTS glucitol/sorbitol transporter subunit IIC | - |
| IUX27_RS05340 (IUX27_05345) | mltB | 1115982..1117067 (+) | 1086 | WP_005051417.1 | lytic murein transglycosylase B | - |
| IUX27_RS05345 (IUX27_05350) | pncC | 1117212..1117709 (+) | 498 | WP_000132231.1 | nicotinamide-nucleotide amidase | - |
| IUX27_RS05350 (IUX27_05355) | recA | 1117789..1118850 (+) | 1062 | WP_000963143.1 | recombinase RecA | Machinery gene |
| IUX27_RS05355 (IUX27_05360) | recX | 1119093..1119593 (+) | 501 | WP_000140506.1 | recombination regulator RecX | - |
| IUX27_RS05360 (IUX27_05365) | alaS | 1119721..1122351 (+) | 2631 | WP_000047164.1 | alanine--tRNA ligase | - |
| IUX27_RS05365 (IUX27_05370) | csrA | 1122586..1122771 (+) | 186 | WP_000906486.1 | carbon storage regulator CsrA | - |
| IUX27_RS05395 (IUX27_05400) | yqaB | 1123830..1124396 (+) | 567 | WP_000273283.1 | fructose-1-phosphate/6-phosphogluconate phosphatase | - |
| IUX27_RS05400 (IUX27_05405) | - | 1124393..1124821 (+) | 429 | WP_001287454.1 | YqaA family protein | - |
| IUX27_RS05405 (IUX27_05410) | gshA | 1124894..1126450 (+) | 1557 | WP_000611802.1 | glutamate--cysteine ligase | - |
| IUX27_RS05410 (IUX27_05415) | luxS | 1126600..1127115 (+) | 516 | WP_001130212.1 | S-ribosylhomocysteine lyase | - |
| IUX27_RS05415 (IUX27_05420) | emrB | 1127179..1128717 (-) | 1539 | WP_001187311.1 | multidrug efflux MFS transporter permease subunit EmrB | - |
| IUX27_RS05420 (IUX27_05425) | emrA | 1128734..1129906 (-) | 1173 | Protein_1041 | multidrug efflux MFS transporter periplasmic adaptor subunit EmrA | - |
| IUX27_RS05425 (IUX27_05430) | emrR | 1130033..1130563 (-) | 531 | WP_000378448.1 | multidrug efflux transporter EmrAB transcriptional repressor EmrR | - |
| IUX27_RS05430 (IUX27_05435) | ygaH | 1130654..1130989 (-) | 336 | WP_000119749.1 | L-valine transporter subunit YgaH | - |
| IUX27_RS05435 (IUX27_05440) | ygaZ | 1130979..1131716 (-) | 738 | WP_000445652.1 | L-valine exporter subunit YgaZ | - |
| IUX27_RS05440 (IUX27_05445) | - | 1131840..1133019 (-) | 1180 | Protein_1045 | MFS transporter | - |
| IUX27_RS05445 (IUX27_05450) | - | 1133061..1133207 (+) | 147 | WP_154810376.1 | hypothetical protein | - |
| IUX27_RS05450 (IUX27_05455) | proX | 1133211..1134203 (-) | 993 | WP_001216527.1 | glycine betaine/L-proline ABC transporter substrate-binding protein ProX | - |
| IUX27_RS05455 (IUX27_05460) | proW | 1134261..1135325 (-) | 1065 | WP_000774986.1 | glycine betaine/L-proline ABC transporter permease ProW | - |
| IUX27_RS05460 (IUX27_05465) | proV | 1135318..1136520 (-) | 1203 | WP_000985596.1 | glycine betaine/L-proline ABC transporter ATP-binding protein ProV | - |
| IUX27_RS05465 (IUX27_05470) | nrdF | 1136875..1137834 (-) | 960 | WP_000777973.1 | class 1b ribonucleoside-diphosphate reductase subunit beta | - |
| IUX27_RS05470 (IUX27_05475) | nrdE | 1137844..1139988 (-) | 2145 | WP_000246518.1 | class 1b ribonucleoside-diphosphate reductase subunit alpha | - |
| IUX27_RS05475 (IUX27_05480) | nrdI | 1139961..1140371 (-) | 411 | WP_000080947.1 | class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI | - |
| IUX27_RS05480 (IUX27_05485) | nrdH | 1140368..1140613 (-) | 246 | WP_001223227.1 | glutaredoxin-like protein NrdH | - |
| IUX27_RS05485 (IUX27_05490) | - | 1140861..1141190 (-) | 330 | Protein_1054 | DUF883 domain-containing protein | - |
| IUX27_RS05490 (IUX27_05495) | - | 1141342..1141686 (+) | 345 | WP_000281320.1 | DUF2002 family protein | - |
| IUX27_RS05495 (IUX27_05500) | alaE | 1141723..1142172 (-) | 450 | WP_000492656.1 | L-alanine exporter AlaE | - |
| IUX27_RS05500 (IUX27_05505) | stpA | 1142840..1143244 (+) | 405 | WP_000115383.1 | DNA-binding protein StpA | - |
| IUX27_RS05505 (IUX27_05510) | ygaP | 1143291..1143815 (-) | 525 | WP_001229472.1 | thiosulfate sulfurtransferase YgaP | - |
| IUX27_RS05510 (IUX27_05515) | - | 1143825..1144124 (-) | 300 | WP_000137292.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| IUX27_RS05515 (IUX27_05520) | - | 1144314..1145542 (+) | 1229 | WP_094081542.1 | IS3-like element IS2 family transposase | - |
| IUX27_RS05520 (IUX27_05525) | - | 1145643..1145801 (+) | 159 | WP_000508176.1 | YqaE/Pmp3 family membrane protein | - |
| IUX27_RS05525 (IUX27_05530) | kbp | 1145885..1146334 (+) | 450 | WP_000522424.1 | potassium binding protein Kbp | - |
| IUX27_RS05530 (IUX27_05535) | csiR | 1146335..1146997 (-) | 663 | WP_000156795.1 | DNA-binding transcriptional regulator CsiR | - |
| IUX27_RS05535 (IUX27_05540) | gabP | 1147018..1148418 (-) | 1401 | WP_005051343.1 | GABA permease | - |
| IUX27_RS05540 (IUX27_05545) | gabT | 1148656..1149942 (-) | 1287 | Protein_1065 | 4-aminobutyrate--2-oxoglutarate transaminase | - |
| IUX27_RS05545 (IUX27_05550) | gabD | 1149950..1151398 (-) | 1449 | Protein_1066 | NADP-dependent succinate-semialdehyde dehydrogenase | - |
| IUX27_RS05550 (IUX27_05555) | lhgO | 1151421..1152689 (-) | 1269 | WP_000271990.1 | L-2-hydroxyglutarate oxidase | - |
| IUX27_RS05555 (IUX27_05560) | glaH | 1152709..1153641 (-) | 933 | WP_005051331.1 | glutarate dioxygenase GlaH | - |
| IUX27_RS05560 (IUX27_05565) | - | 1153977..1156229 (-) | 2253 | WP_112333929.1 | alpha-amylase family glycosyl hydrolase | - |
| IUX27_RS05580 (IUX27_05585) | - | 1159289..1160530 (-) | 1242 | WP_000113817.1 | integrase | - |
Sequence
Protein
Download Length: 353 a.a. Molecular weight: 37973.37 Da Isoelectric Point: 4.8171
>NTDB_id=615845 IUX27_RS05350 WP_000963143.1 1117789..1118850(+) (recA) [Shigella flexneri strain P099]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEI
EKKVRELLLSNPNSTPDFSVDDSEGVAETNEDF
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEI
EKKVRELLLSNPNSTPDFSVDDSEGVAETNEDF
Nucleotide
Download Length: 1062 bp
>NTDB_id=615845 IUX27_RS05350 WP_000963143.1 1117789..1118850(+) (recA) [Shigella flexneri strain P099]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATTGAGAAACAATTTGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGATGTGGAAACCATCTCTACCGGTTCGCTTTCACTGGATATCGCGCTTGGGG
CAGGTGGTCTGCCGATGGGCCGTATCGTCGAAATCTACGGACCGGAATCTTCCGGTAAAACCACGCTGACGCTGCAGGTG
ATCGCCGCAGCGCAGCGTGAAGGTAAAACCTGTGCGTTTATCGATGCTGAACACGCGCTGGACCCAATCTACGCACGTAA
ACTGGGCGTCGATATCGATAACCTGCTGTGCTCCCAGCCGGATACCGGCGAGCAGGCACTGGAAATCTGTGACGCCCTGG
CGCGTTCTGGCGCAGTAGACGTTATCGTCGTTGACTCCGTGGCGGCACTGACGCCGAAAGCGGAAATCGAAGGCGAAATC
GGCGACTCTCACATGGGCCTTGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCGGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGTGTGATGTTCGGTAACCCGGAAACCACTACCGGTGGTA
ACGCGCTGAAATTCTACGCCTCTGTTCGTCTCGACATCCGTCGTATCGGCGCGGTGAAAGAGGGCGAAAACGTGGTGGGT
AGCGAAACCCGCGTGAAAGTGGTGAAGAACAAAATCGCTGCACCGTTTAAACAGGCTGAATTTCAGATCCTCTACGGCGA
AGGTATCAACTTCTACGGCGAACTGGTTGACCTGGGCGTAAAAGAGAAGCTGATCGAGAAAGCAGGCGCGTGGTACAGCT
ACAAAGGTGAGAAGATCGGTCAGGGTAAAGCGAATGCAACTGCCTGGCTGAAAGATAACCCGGAAACCGCGAAAGAGATC
GAGAAGAAAGTACGTGAGTTGCTGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGACAGCGAAGGAGTAGC
AGAAACTAACGAAGATTTTTAA
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATTGAGAAACAATTTGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGATGTGGAAACCATCTCTACCGGTTCGCTTTCACTGGATATCGCGCTTGGGG
CAGGTGGTCTGCCGATGGGCCGTATCGTCGAAATCTACGGACCGGAATCTTCCGGTAAAACCACGCTGACGCTGCAGGTG
ATCGCCGCAGCGCAGCGTGAAGGTAAAACCTGTGCGTTTATCGATGCTGAACACGCGCTGGACCCAATCTACGCACGTAA
ACTGGGCGTCGATATCGATAACCTGCTGTGCTCCCAGCCGGATACCGGCGAGCAGGCACTGGAAATCTGTGACGCCCTGG
CGCGTTCTGGCGCAGTAGACGTTATCGTCGTTGACTCCGTGGCGGCACTGACGCCGAAAGCGGAAATCGAAGGCGAAATC
GGCGACTCTCACATGGGCCTTGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCGGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGTGTGATGTTCGGTAACCCGGAAACCACTACCGGTGGTA
ACGCGCTGAAATTCTACGCCTCTGTTCGTCTCGACATCCGTCGTATCGGCGCGGTGAAAGAGGGCGAAAACGTGGTGGGT
AGCGAAACCCGCGTGAAAGTGGTGAAGAACAAAATCGCTGCACCGTTTAAACAGGCTGAATTTCAGATCCTCTACGGCGA
AGGTATCAACTTCTACGGCGAACTGGTTGACCTGGGCGTAAAAGAGAAGCTGATCGAGAAAGCAGGCGCGTGGTACAGCT
ACAAAGGTGAGAAGATCGGTCAGGGTAAAGCGAATGCAACTGCCTGGCTGAAAGATAACCCGGAAACCGCGAAAGAGATC
GAGAAGAAAGTACGTGAGTTGCTGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGACAGCGAAGGAGTAGC
AGAAACTAACGAAGATTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.