Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   SCRE_RS09195 Genome accession   NC_022236
Coordinates   1829186..1830331 (-) Length   381 a.a.
NCBI ID   WP_020998092.1    Uniprot ID   -
Organism   Streptococcus constellatus subsp. pharyngis C232     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1824186..1835331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCRE_RS09155 (SCRE_1789) - 1824340..1824777 (-) 438 WP_003071462.1 SP_0198 family lipoprotein -
  SCRE_RS09160 (SCRE_1790) - 1824826..1826070 (-) 1245 WP_020998091.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  SCRE_RS09165 (SCRE_1791) - 1826271..1826576 (-) 306 WP_006269082.1 DUF1292 domain-containing protein -
  SCRE_RS09170 (SCRE_1792) ruvX 1826594..1827013 (-) 420 WP_003071469.1 Holliday junction resolvase RuvX -
  SCRE_RS09175 (SCRE_1793) - 1827013..1827279 (-) 267 WP_009569646.1 IreB family regulatory phosphoprotein -
  SCRE_RS10775 - 1827403..1827738 (-) 336 WP_006268977.1 SP0191 family lipoprotein -
  SCRE_RS09185 (SCRE_1794) - 1828064..1828564 (-) 501 WP_006269036.1 SP0191 family lipoprotein -
  SCRE_RS09190 (SCRE_1795) spx 1828701..1829099 (-) 399 WP_003026638.1 transcriptional regulator Spx -
  SCRE_RS09195 (SCRE_1796) recA 1829186..1830331 (-) 1146 WP_020998092.1 recombinase RecA Machinery gene
  SCRE_RS09200 (SCRE_1797) cinA 1830380..1831648 (-) 1269 WP_020998093.1 competence/damage-inducible protein A Machinery gene
  SCRE_RS09205 (SCRE_1798) - 1831804..1832433 (-) 630 WP_020998094.1 ABC transporter ATP-binding protein -
  SCRE_RS09210 (SCRE_1799) - 1832430..1834439 (-) 2010 WP_020998095.1 hypothetical protein -
  SCRE_RS09215 (SCRE_1800) - 1834538..1834807 (-) 270 WP_020998096.1 hypothetical protein -

Sequence


Protein


Download         Length: 381 a.a.        Molecular weight: 41263.97 Da        Isoelectric Point: 5.0651

>NTDB_id=61498 SCRE_RS09195 WP_020998092.1 1829186..1830331(-) (recA) [Streptococcus constellatus subsp. pharyngis C232]
MAKKQKKLEEISKKFGEERQKALDNALKNIEKDFGKGAIMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAQALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGTGDEKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISKTGELIKIATDLDIIKKAGAWYSYNDEKIGQGSE
NAKKYLAAHPEIFDEIDHKVRVHYGLIENDTEDEKNAEAIKSANKVEEVTLDLDDAIEIEE

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=61498 SCRE_RS09195 WP_020998092.1 1829186..1830331(-) (recA) [Streptococcus constellatus subsp. pharyngis C232]
ATGGCGAAAAAACAAAAAAAATTAGAAGAAATTTCAAAGAAATTTGGTGAGGAACGTCAAAAAGCGTTAGATAATGCACT
TAAAAATATCGAAAAAGATTTTGGTAAAGGGGCAATTATGCGTTTGGGGGAGCGCGCTGAACAAAAAGTTCAAGTTATGA
GCTCAGGTAGCTTGGCGTTAGATATTGCACTTGGCGCAGGAGGGTACCCAAAAGGTCGGATTATTGAAATCTATGGACCA
GAATCATCTGGTAAGACGACAGTGGCCCTCCATGCTGTTGCTCAGGCTCAGAAAGAAGGCGGAATTGCGGCCTTTATTGA
TGCTGAGCACGCTCTGGATCCGGCGTATGCGCAAGCTCTTGGGGTTAATATTGACGAATTACTCCTTTCTCAACCAGATT
CTGGCGAGCAAGGACTAGAAATTGCTGGGAAATTGATTGATTCTGGTGCAGTAGATTTGGTGGTTATTGACTCTGTGGCA
GCTCTTGTACCGCGTGCTGAAATTGATGGTGATATCGGAGATAGCCATGTTGGTTTGCAAGCGCGTATGATGAGTCAAGC
TATGCGTAAACTATCTGCTTCTATCAACAAAACCAAAACGATTGCAATCTTCATCAACCAACTACGCGAAAAAGTTGGTA
TTATGTTTGGAAATCCAGAAACAACACCGGGCGGTCGAGCTCTTAAATTTTATGCTTCTGTCCGTCTGGATGTCCGTGGC
AATACTCAAATCAAGGGAACTGGTGATGAAAAGGACACTAATGTCGGTAAGGAAACCAAAATTAAGGTTGTGAAAAACAA
GGTGGCTCCGCCATTTAAAGAAGCCTTTGTGGAAATCATGTATGGTGAAGGAATTTCCAAAACAGGTGAGCTCATCAAGA
TTGCAACAGACCTAGATATTATCAAAAAAGCGGGCGCGTGGTATTCTTACAATGATGAAAAGATTGGGCAAGGGTCTGAA
AATGCTAAGAAATACTTAGCAGCTCATCCAGAAATTTTTGATGAAATTGATCACAAGGTTCGAGTTCACTATGGTTTGAT
TGAGAATGATACTGAAGATGAAAAAAATGCAGAAGCAATTAAATCAGCAAACAAAGTAGAGGAAGTGACTCTAGACTTGG
ACGATGCGATTGAGATTGAGGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pneumoniae R6

88.083

100

0.892

  recA Streptococcus pneumoniae TIGR4

88.083

100

0.892

  recA Streptococcus pneumoniae Rx1

88.083

100

0.892

  recA Streptococcus pneumoniae D39

88.083

100

0.892

  recA Streptococcus mitis NCTC 12261

88.714

100

0.887

  recA Streptococcus mitis SK321

87.927

100

0.879

  recA Streptococcus mutans UA159

86.162

100

0.866

  recA Streptococcus pyogenes NZ131

85.827

100

0.858

  recA Lactococcus lactis subsp. cremoris KW2

77.874

91.339

0.711

  recA Latilactobacillus sakei subsp. sakei 23K

65.746

95.013

0.625

  recA Bacillus subtilis subsp. subtilis str. 168

69.578

87.139

0.606

  recA Neisseria gonorrhoeae strain FA1090

60.694

90.814

0.551

  recA Neisseria gonorrhoeae MS11

60.694

90.814

0.551

  recA Neisseria gonorrhoeae MS11

60.694

90.814

0.551

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.272

85.039

0.538

  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.769

85.302

0.535

  recA Vibrio cholerae strain A1552

62.769

85.302

0.535

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.79

86.352

0.525

  recA Acinetobacter baumannii D1279779

61.538

85.302

0.525

  recA Glaesserella parasuis strain SC1401

61.231

85.302

0.522

  recA Acinetobacter baylyi ADP1

60.615

85.302

0.517

  recA Pseudomonas stutzeri DSM 10701

56.034

91.339

0.512

  recA Helicobacter pylori 26695

58.485

86.614

0.507

  recA Helicobacter pylori strain NCTC11637

58.485

86.614

0.507

  recA Ralstonia pseudosolanacearum GMI1000

60.883

83.202

0.507

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.006

86.877

0.504


Multiple sequence alignment