Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LG295_RS08250 Genome accession   NZ_CP085024
Coordinates   1722449..1723498 (-) Length   349 a.a.
NCBI ID   WP_107531839.1    Uniprot ID   -
Organism   Staphylococcus pseudoxylosus strain SLM-183     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1717449..1728498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG295_RS08235 (LG295_08240) - 1719015..1719803 (-) 789 WP_107530926.1 TIGR00282 family metallophosphoesterase -
  LG295_RS08240 (LG295_08245) - 1719970..1720185 (+) 216 WP_107530927.1 hypothetical protein -
  LG295_RS08245 (LG295_08250) rny 1720404..1721963 (-) 1560 WP_017724323.1 ribonuclease Y -
  LG295_RS08250 (LG295_08255) recA 1722449..1723498 (-) 1050 WP_107531839.1 recombinase RecA Machinery gene
  LG295_RS08255 (LG295_08260) - 1723672..1724814 (-) 1143 WP_107558232.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  LG295_RS08260 (LG295_08265) pgsA 1725021..1725596 (-) 576 WP_107531837.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LG295_RS08265 (LG295_08270) - 1725648..1726040 (-) 393 WP_107531836.1 RodZ family helix-turn-helix domain-containing protein -
  LG295_RS08270 (LG295_08275) - 1726072..1726902 (-) 831 WP_017724318.1 YmfK family protein -
  LG295_RS08275 (LG295_08280) ymfI 1727034..1727738 (-) 705 WP_107558233.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37800.69 Da        Isoelectric Point: 4.8681

>NTDB_id=614696 LG295_RS08250 WP_107531839.1 1722449..1723498(-) (recA) [Staphylococcus pseudoxylosus strain SLM-183]
MDNDRQKALDTVIKNMEKSFGKGAVMKLGDNEARKVSSVSSGSVTLDNALGVGGYPKGRIVEIYGPESSGKTTVALHAIA
EVQRNGGVAAFIDAEHALDPVYAEALGVDIQNLYLSQPDHGEQGLEIAEAFVRSGAVEIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAVFINQIREKVGVMFGNPEVTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGKGISKEGELIDLGVENEIVDKSGAWYSYNGDRMGQGKENVKSYLKENPAVKEEIDR
KLREKLGIFDGDVEESEAENTATLFDEEE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=614696 LG295_RS08250 WP_107531839.1 1722449..1723498(-) (recA) [Staphylococcus pseudoxylosus strain SLM-183]
TTGGATAACGATCGTCAAAAGGCTTTAGATACAGTAATTAAAAATATGGAGAAATCATTTGGTAAAGGCGCGGTAATGAA
ATTGGGTGATAACGAAGCACGCAAAGTTTCAAGTGTTTCAAGTGGTTCTGTAACATTAGATAATGCTTTAGGAGTAGGTG
GTTACCCTAAAGGTAGAATTGTAGAAATTTATGGTCCAGAAAGTTCTGGTAAAACGACTGTGGCACTTCATGCCATTGCG
GAAGTTCAGAGAAATGGTGGCGTGGCAGCTTTTATTGATGCTGAACATGCATTAGACCCAGTTTACGCAGAAGCATTGGG
TGTTGATATTCAAAACTTATATTTATCACAGCCTGACCATGGGGAACAAGGATTAGAAATTGCAGAAGCATTTGTAAGAA
GTGGTGCTGTTGAGATAGTTGTTGTTGACTCTGTTGCAGCATTAACACCTAAAGCAGAAATTGAAGGTGAAATGGGAGAT
ACACACGTTGGTTTACAAGCACGTTTGATGTCACAAGCCCTAAGAAAACTTTCAGGCGCGATATCTAAATCAAATACGAC
TGCAGTATTCATTAACCAAATCCGTGAGAAAGTCGGTGTTATGTTCGGTAACCCTGAAGTTACTCCAGGTGGTCGTGCAC
TGAAATTCTATAGTTCTGTTCGTTTAGAAGTACGCCGTGCGGAACAATTAAAACAAGGACAAGATATTGTCGGTAATAGA
ACTAAAATTAAAGTTGTTAAGAATAAAGTCGCACCACCATTTAGAGTTGCTGAAGTTGATATTATGTATGGTAAAGGCAT
CTCTAAAGAGGGAGAATTAATCGATTTAGGTGTTGAAAACGAAATCGTTGATAAGTCGGGTGCTTGGTATTCTTATAATG
GTGACAGAATGGGACAAGGTAAAGAAAATGTCAAATCTTACCTCAAAGAAAACCCTGCTGTCAAAGAAGAAATAGATAGA
AAACTAAGAGAAAAATTAGGTATATTTGATGGAGATGTTGAAGAGTCGGAAGCTGAAAATACAGCGACACTTTTTGACGA
AGAAGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

75.46

93.41

0.705
  recA Latilactobacillus sakei subsp. sakei 23K

68.391

99.713

0.682
  recA Streptococcus mutans UA159

62.857

100

0.63
  recA Streptococcus pneumoniae R6

64.035

97.994

0.628
  recA Streptococcus pneumoniae Rx1

64.035

97.994

0.628
  recA Streptococcus pneumoniae D39

64.035

97.994

0.628
  recA Streptococcus pneumoniae TIGR4

64.035

97.994

0.628
  recA Streptococcus pyogenes NZ131

66.565

94.269

0.628
  recA Neisseria gonorrhoeae strain FA1090

63.372

98.567

0.625
  recA Neisseria gonorrhoeae MS11

63.372

98.567

0.625
  recA Neisseria gonorrhoeae MS11

63.372

98.567

0.625
  recA Streptococcus mitis NCTC 12261

62.717

99.14

0.622
  recA Lactococcus lactis subsp. cremoris KW2

65.257

94.842

0.619
  recA Streptococcus mitis SK321

64.565

95.415

0.616
  recA Acinetobacter baylyi ADP1

65.031

93.41

0.607
  recA Helicobacter pylori 26695

64.329

93.983

0.605
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.83

94.269

0.602
  recA Acinetobacter baumannii D1279779

64.417

93.41

0.602
  recA Vibrio cholerae strain A1552

64.417

93.41

0.602
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.417

93.41

0.602
  recA Helicobacter pylori strain NCTC11637

64.024

93.983

0.602
  recA Ralstonia pseudosolanacearum GMI1000

64.856

89.685

0.582
  recA Glaesserella parasuis strain SC1401

57.714

100

0.579
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.542

95.129

0.576
  recA Pseudomonas stutzeri DSM 10701

61.656

93.41

0.576
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.188

91.404

0.55