Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LG320_RS05595 Genome accession   NZ_CP085018
Coordinates   1096956..1097999 (+) Length   347 a.a.
NCBI ID   WP_026833448.1    Uniprot ID   A0A419DRF7
Organism   Exiguobacterium undae strain SLM-182     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1091956..1102999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG320_RS05570 (LG320_05560) ymfI 1092401..1093105 (+) 705 WP_214721189.1 elongation factor P 5-aminopentanone reductase -
  LG320_RS05575 (LG320_05565) - 1093198..1093980 (+) 783 WP_026833452.1 DUF3388 domain-containing protein -
  LG320_RS05580 (LG320_05570) - 1094008..1094898 (+) 891 WP_026833451.1 RodZ family helix-turn-helix domain-containing protein -
  LG320_RS05585 (LG320_05575) pgsA 1094960..1095538 (+) 579 WP_026833450.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LG320_RS05590 (LG320_05580) - 1095610..1096854 (+) 1245 WP_404276293.1 competence/damage-inducible protein A -
  LG320_RS05595 (LG320_05585) recA 1096956..1097999 (+) 1044 WP_026833448.1 recombinase RecA Machinery gene
  LG320_RS05600 (LG320_05590) rny 1098194..1099756 (+) 1563 WP_026833447.1 ribonuclease Y -
  LG320_RS05605 (LG320_05595) - 1099807..1100601 (+) 795 WP_012369931.1 TIGR00282 family metallophosphoesterase -
  LG320_RS05610 (LG320_05600) - 1100631..1100891 (+) 261 WP_026833446.1 stage V sporulation protein S -
  LG320_RS05615 (LG320_05605) - 1101073..1102824 (+) 1752 WP_404277021.1 2-oxoacid:acceptor oxidoreductase subunit alpha -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37718.93 Da        Isoelectric Point: 5.3358

>NTDB_id=614566 LG320_RS05595 WP_026833448.1 1096956..1097999(+) (recA) [Exiguobacterium undae strain SLM-182]
MSDRKAALEMALRQIEKQFGKGSIMKLGESADQRVSVISSGSITLDIALGAGGYPRGRVIEVYGPESSGKTTVALHAIAE
VQKQGGQAAFIDAEHALDPAYANKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDILVVDSVAALVPKAEIEGEMGDS
HMGLQARLMSQALRKLSGATNKSKTIVIFINQIREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEALKNGTDIVGNRT
KLKVVKNKIAPPFKQAEVDIMYGQGISKFGELIDIGTDLDIVQKSGAWYSYNSERLGQGRENAKQYMIEHPEVANEVERL
IREHHGLVDRKDPVDFEEGQAEDMFAE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=614566 LG320_RS05595 WP_026833448.1 1096956..1097999(+) (recA) [Exiguobacterium undae strain SLM-182]
GTGAGTGATCGTAAAGCAGCACTTGAGATGGCGTTACGCCAGATTGAGAAACAATTTGGTAAAGGTTCAATCATGAAACT
AGGTGAAAGTGCAGATCAGAGAGTATCGGTGATCTCATCTGGATCTATCACATTAGATATAGCTCTCGGTGCAGGTGGAT
ATCCACGTGGACGGGTAATCGAAGTCTATGGTCCGGAATCTTCGGGTAAGACGACAGTCGCGCTTCACGCGATTGCTGAA
GTTCAGAAACAAGGCGGACAAGCAGCTTTCATCGATGCAGAGCACGCACTTGATCCTGCTTATGCCAACAAACTAGGCGT
TAACATCGACGAGCTTCTTTTGTCACAACCGGATACAGGAGAGCAGGCGCTTGAAATCGCAGAAGCTCTTGTCCGTTCAG
GTGCTGTCGATATTCTAGTCGTCGACTCCGTTGCCGCGCTCGTTCCTAAAGCCGAGATCGAAGGCGAAATGGGTGACTCA
CACATGGGTCTGCAAGCACGTTTAATGAGTCAGGCACTACGTAAATTGTCTGGTGCTACAAATAAATCAAAAACCATCGT
TATCTTCATCAACCAGATTCGTGAGAAGATTGGTGTCATGTTTGGTAATCCGGAAACGACTCCAGGTGGACGTGCGTTGA
AATTCTACTCGTCTGTCCGTCTTGAAGTTCGTCGTGCGGAAGCATTGAAAAACGGAACCGATATCGTCGGTAACCGGACG
AAACTGAAAGTTGTTAAAAACAAAATTGCGCCGCCGTTCAAACAAGCGGAAGTCGATATCATGTACGGTCAAGGTATCTC
GAAATTCGGTGAATTGATCGACATCGGGACAGATCTCGATATCGTTCAAAAAAGCGGAGCATGGTATTCATACAATTCAG
AGCGTCTTGGTCAAGGACGTGAGAATGCAAAACAATATATGATTGAGCATCCGGAAGTAGCGAACGAAGTCGAACGCTTA
ATTCGTGAGCATCATGGTCTTGTGGATCGCAAGGATCCTGTTGATTTCGAAGAAGGTCAAGCAGAAGATATGTTTGCGGA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A419DRF7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

82.263

94.236

0.775
  recA Latilactobacillus sakei subsp. sakei 23K

74.312

94.236

0.7
  recA Streptococcus pneumoniae D39

69.277

95.677

0.663
  recA Streptococcus pneumoniae R6

69.277

95.677

0.663
  recA Streptococcus pneumoniae TIGR4

69.277

95.677

0.663
  recA Streptococcus pneumoniae Rx1

69.277

95.677

0.663
  recA Streptococcus mitis SK321

68.976

95.677

0.66
  recA Streptococcus mitis NCTC 12261

68.675

95.677

0.657
  recA Streptococcus pyogenes NZ131

68.902

94.524

0.651
  recA Streptococcus mutans UA159

67.47

95.677

0.646
  recA Lactococcus lactis subsp. cremoris KW2

66.566

95.677

0.637
  recA Acinetobacter baumannii D1279779

62.609

99.424

0.622
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.355

92.507

0.614
  recA Vibrio cholerae strain A1552

66.355

92.507

0.614
  recA Neisseria gonorrhoeae MS11

64.438

94.813

0.611
  recA Neisseria gonorrhoeae MS11

64.438

94.813

0.611
  recA Neisseria gonorrhoeae strain FA1090

64.438

94.813

0.611
  recA Acinetobacter baylyi ADP1

64.615

93.66

0.605
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.609

94.236

0.599
  recA Ralstonia pseudosolanacearum GMI1000

66.454

90.202

0.599
  recA Pseudomonas stutzeri DSM 10701

63.438

92.219

0.585
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.27

93.948

0.585
  recA Glaesserella parasuis strain SC1401

63.323

91.931

0.582
  recA Helicobacter pylori strain NCTC11637

61.538

93.66

0.576
  recA Helicobacter pylori 26695

61.231

93.66

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.025

91.066

0.565