Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LG311_RS09900 Genome accession   NZ_CP085008
Coordinates   1927487..1928527 (+) Length   346 a.a.
NCBI ID   WP_223493378.1    Uniprot ID   -
Organism   Sutcliffiella horikoshii strain SLM-179     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1922487..1933527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG311_RS09875 (LG311_09835) - 1923064..1923321 (+) 258 WP_010193278.1 DUF3243 domain-containing protein -
  LG311_RS09880 (LG311_09840) - 1923461..1924252 (+) 792 WP_010193276.1 DUF3388 domain-containing protein -
  LG311_RS09885 (LG311_09845) - 1924274..1925173 (+) 900 WP_404351562.1 helix-turn-helix domain-containing protein -
  LG311_RS09890 (LG311_09850) pgsA 1925321..1925905 (+) 585 WP_223493376.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LG311_RS09895 (LG311_09855) cinA 1925930..1927174 (+) 1245 WP_404351564.1 competence/damage-inducible protein A Machinery gene
  LG311_RS09900 (LG311_09860) recA 1927487..1928527 (+) 1041 WP_223493378.1 recombinase RecA Machinery gene
  LG311_RS09905 (LG311_09865) rny 1928831..1930393 (+) 1563 WP_317849253.1 ribonuclease Y -
  LG311_RS09910 (LG311_09870) - 1930496..1931290 (+) 795 WP_404352000.1 TIGR00282 family metallophosphoesterase -
  LG311_RS09915 (LG311_09875) spoVS 1931438..1931698 (+) 261 WP_010193268.1 stage V sporulation protein SpoVS -
  LG311_RS09920 (LG311_09880) - 1931790..1932728 (+) 939 WP_404352003.1 dipeptidase -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37742.93 Da        Isoelectric Point: 5.2020

>NTDB_id=614418 LG311_RS09900 WP_223493378.1 1927487..1928527(+) (recA) [Sutcliffiella horikoshii strain SLM-179]
MSDRKAALDMALKQIEKQFGKGSIMKLGEQTERKISTIPSGSLALDVALGAGGYPRGRVVEIYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGHDIVGNKT
KIKVVKNKIAPPFKVAEVDIMYGEGISREGEVIDMGSDLDIVQKSGSWYSYNEERLGQGRENAKQFLKENKDVLKEIHQQ
IRDHHGLDKDLTAPADEEMDQEELDF

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=614418 LG311_RS09900 WP_223493378.1 1927487..1928527(+) (recA) [Sutcliffiella horikoshii strain SLM-179]
GTGAGTGATCGTAAAGCGGCTTTAGATATGGCGTTAAAACAGATAGAAAAGCAATTCGGAAAAGGTTCCATTATGAAATT
AGGGGAACAAACAGAACGTAAGATTTCCACTATTCCAAGTGGATCGTTGGCATTGGACGTTGCATTGGGTGCCGGCGGAT
ATCCTCGAGGCAGAGTGGTAGAAATATATGGTCCGGAATCTTCCGGTAAAACAACTGTTGCCCTTCATGCTATCGCTGAA
GTACAGCAACAAGGCGGACAAGCTGCGTTTATCGATGCGGAGCATGCGTTGGATCCAGTATACGCGCAAAAACTTGGCGT
AAACATTGATGAGCTTCTTCTTTCTCAACCAGATACTGGTGAGCAAGCATTAGAAATCGCAGAGGCTCTTGTAAGAAGTG
GTGCGGTTGACATTATCGTTGTCGATTCTGTAGCTGCCCTAGTACCTAAAGCGGAAATCGAAGGGGAAATGGGAGACTCC
CACGTTGGTCTTCAAGCTCGTTTAATGTCCCAAGCTCTTCGTAAACTTTCAGGTGCCATCAATAAATCAAAAACCATTGC
TATTTTCATCAACCAGATTCGTGAAAAAGTCGGGGTAATGTTTGGTAACCCCGAAACGACTCCTGGTGGCCGTGCCTTGA
AATTCTACTCTTCCGTACGTTTAGAAGTGCGTCGTGCAGAGCAGTTGAAACAAGGTCATGACATTGTCGGGAATAAAACA
AAGATTAAAGTTGTGAAAAATAAAATAGCTCCTCCTTTCAAAGTAGCTGAAGTGGATATCATGTACGGTGAAGGTATCTC
AAGAGAAGGGGAAGTCATTGATATGGGCTCCGATTTGGATATTGTCCAAAAAAGTGGTTCATGGTATTCCTACAATGAAG
AAAGACTAGGACAAGGACGCGAAAATGCGAAGCAATTCCTAAAAGAAAACAAGGATGTCCTAAAAGAAATTCACCAGCAA
ATTCGTGATCACCACGGATTGGATAAAGATTTAACTGCACCAGCGGATGAAGAAATGGATCAAGAAGAACTAGATTTTTA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

89.091

95.376

0.85
  recA Latilactobacillus sakei subsp. sakei 23K

73.099

98.844

0.723
  recA Streptococcus pyogenes NZ131

67.139

100

0.685
  recA Streptococcus mutans UA159

70.213

95.087

0.668
  recA Streptococcus mitis SK321

69.697

95.376

0.665
  recA Streptococcus mitis NCTC 12261

69.394

95.376

0.662
  recA Streptococcus pneumoniae Rx1

69.394

95.376

0.662
  recA Streptococcus pneumoniae D39

69.394

95.376

0.662
  recA Streptococcus pneumoniae R6

69.394

95.376

0.662
  recA Streptococcus pneumoniae TIGR4

69.394

95.376

0.662
  recA Lactococcus lactis subsp. cremoris KW2

67.568

96.243

0.65
  recA Neisseria gonorrhoeae MS11

63.663

99.422

0.633
  recA Neisseria gonorrhoeae MS11

63.663

99.422

0.633
  recA Neisseria gonorrhoeae strain FA1090

63.663

99.422

0.633
  recA Vibrio cholerae strain A1552

66.044

92.775

0.613
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.044

92.775

0.613
  recA Acinetobacter baylyi ADP1

61.095

100

0.613
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.018

97.399

0.604
  recA Ralstonia pseudosolanacearum GMI1000

66.773

90.462

0.604
  recA Glaesserella parasuis strain SC1401

60.116

100

0.601
  recA Helicobacter pylori 26695

60.234

98.844

0.595
  recA Helicobacter pylori strain NCTC11637

60.234

98.844

0.595
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.691

94.509

0.592
  recA Pseudomonas stutzeri DSM 10701

63.75

92.486

0.59
  recA Acinetobacter baumannii D1279779

62.733

93.064

0.584
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.991

93.353

0.569