Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LHA26_RS00580 Genome accession   NZ_CP084930
Coordinates   121904..122953 (-) Length   349 a.a.
NCBI ID   WP_252166819.1    Uniprot ID   -
Organism   Sphingomonas morindae strain NBD5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 116904..127953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LHA26_RS00555 (LHA26_00555) - 118296..118514 (+) 219 WP_252166814.1 DUF3072 domain-containing protein -
  LHA26_RS00560 (LHA26_00560) - 118931..119362 (-) 432 WP_252166815.1 nuclear transport factor 2 family protein -
  LHA26_RS00565 (LHA26_00565) - 119449..119625 (-) 177 WP_252166816.1 hypothetical protein -
  LHA26_RS00570 (LHA26_00570) - 119706..121157 (-) 1452 WP_252166817.1 Xaa-Pro peptidase family protein -
  LHA26_RS00575 (LHA26_00575) - 121273..121899 (-) 627 WP_252166818.1 glutathione S-transferase family protein -
  LHA26_RS00580 (LHA26_00580) recA 121904..122953 (-) 1050 WP_252166819.1 recombinase RecA Machinery gene
  LHA26_RS00585 (LHA26_00585) - 123159..123512 (-) 354 WP_252166820.1 response regulator -
  LHA26_RS00590 (LHA26_00590) - 123551..125995 (-) 2445 WP_252166821.1 ATP-binding protein -
  LHA26_RS00595 (LHA26_00595) smpB 126186..126668 (-) 483 WP_252166822.1 SsrA-binding protein SmpB -
  LHA26_RS00600 (LHA26_00600) dapA 126673..127548 (-) 876 WP_252166823.1 4-hydroxy-tetrahydrodipicolinate synthase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37354.75 Da        Isoelectric Point: 5.5442

>NTDB_id=614134 LHA26_RS00580 WP_252166819.1 121904..122953(-) (recA) [Sphingomonas morindae strain NBD5]
MIDKLAASDRQKALDAALAQIDRAFGKGSAMKLGSREAMQVEAISTGSLGLDIALGIGGLPRGRIVEIYGPESSGKTTLA
LHAIAEAQKMGGTAAFVDAEHALDPVYAKKLGVNIDELIVSQPDTGEQALEITDTLVRSNAIDVLVVDSVAALVPRAEIE
GEMGDSHVGLQARLMSQALRKLTGSISRSRCLVIFINQVRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTGQIKDRDD
IVGNATRVKVVKNKVAPPFKQVEFDIMYGEGVSKIGEILDLGVKAGLVEKSGAWFSYDSTRIGQGRENAKTFLREHPDMA
EKLERAIRGKTEGLGEAMMAGPEDDGAED

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=614134 LHA26_RS00580 WP_252166819.1 121904..122953(-) (recA) [Sphingomonas morindae strain NBD5]
ATGATCGACAAGCTGGCGGCGTCCGACAGGCAGAAGGCGCTCGACGCCGCGCTCGCGCAGATCGACCGCGCCTTCGGCAA
GGGCTCGGCGATGAAGCTCGGCTCGCGCGAGGCGATGCAGGTGGAGGCGATCTCCACCGGCTCGCTCGGGCTCGACATCG
CGCTCGGCATCGGCGGCCTGCCGCGCGGCCGCATCGTCGAGATCTATGGGCCGGAAAGCTCGGGCAAGACGACGCTGGCG
CTGCACGCCATCGCCGAGGCGCAGAAGATGGGCGGCACCGCCGCCTTCGTCGATGCCGAGCATGCGCTCGACCCCGTCTA
TGCCAAGAAGCTGGGCGTCAATATCGACGAGCTGATCGTCTCGCAGCCCGATACGGGCGAGCAGGCGCTGGAGATCACCG
ACACGCTGGTGCGCTCCAACGCGATCGACGTGCTGGTGGTCGATTCGGTGGCGGCGCTGGTGCCGCGCGCCGAGATCGAG
GGCGAGATGGGCGACAGCCATGTCGGCCTGCAGGCGCGGCTGATGAGCCAGGCGCTGCGCAAGCTCACCGGCTCGATCAG
CCGCTCGCGCTGCCTCGTGATCTTCATCAACCAGGTGCGCATGAAGATTGGCGTGATGTACGGCAATCCCGAGACGACGA
CGGGCGGCAACGCGCTGAAATTCTACGCCTCGGTCCGGCTCGACATCCGCCGCACCGGGCAGATCAAGGATCGCGACGAT
ATCGTCGGCAACGCCACGCGCGTGAAGGTGGTGAAGAACAAGGTGGCGCCGCCGTTCAAGCAGGTCGAGTTCGACATCAT
GTATGGCGAGGGCGTGTCCAAGATCGGCGAGATCCTCGATCTCGGCGTCAAGGCGGGGCTGGTCGAGAAATCGGGCGCCT
GGTTCAGCTATGACTCGACGCGGATCGGCCAGGGACGGGAAAACGCCAAGACCTTCCTGCGCGAGCATCCCGACATGGCC
GAGAAGCTGGAGCGCGCCATTCGCGGCAAGACCGAAGGCCTGGGCGAGGCGATGATGGCCGGCCCCGAGGACGACGGCGC
GGAGGACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(12-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

71.429

92.264

0.659
  recA Vibrio cholerae strain A1552

68.155

96.275

0.656
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.155

96.275

0.656
  recA Glaesserella parasuis strain SC1401

69.512

93.983

0.653
  recA Neisseria gonorrhoeae MS11

69.04

92.55

0.639
  recA Neisseria gonorrhoeae MS11

69.04

92.55

0.639
  recA Neisseria gonorrhoeae strain FA1090

69.04

92.55

0.639
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.667

94.556

0.63
  recA Acinetobacter baumannii D1279779

68.438

91.691

0.628
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.035

97.994

0.628
  recA Bacillus subtilis subsp. subtilis str. 168

68.224

91.977

0.628
  recA Acinetobacter baylyi ADP1

68.125

91.691

0.625
  recA Ralstonia pseudosolanacearum GMI1000

70.779

88.252

0.625
  recA Helicobacter pylori strain NCTC11637

62.611

96.562

0.605
  recA Helicobacter pylori 26695

62.315

96.562

0.602
  recA Latilactobacillus sakei subsp. sakei 23K

64.506

92.837

0.599
  recA Streptococcus pneumoniae D39

61.562

95.415

0.587
  recA Streptococcus pyogenes NZ131

61.562

95.415

0.587
  recA Streptococcus pneumoniae Rx1

61.562

95.415

0.587
  recA Streptococcus pneumoniae R6

61.562

95.415

0.587
  recA Streptococcus pneumoniae TIGR4

61.562

95.415

0.587
  recA Streptococcus mitis NCTC 12261

61.329

94.842

0.582
  recA Streptococcus mitis SK321

61.329

94.842

0.582
  recA Streptococcus mutans UA159

60.423

94.842

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.893

91.117

0.573
  recA Lactococcus lactis subsp. cremoris KW2

60.121

94.842

0.57