Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LHA31_RS03560 Genome accession   NZ_CP084916
Coordinates   719755..720792 (-) Length   345 a.a.
NCBI ID   WP_035021910.1    Uniprot ID   A0A1H1BB01
Organism   Carnobacterium viridans strain AB01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 714755..725792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LHA31_RS03550 (LHA31_03550) - 716900..717706 (-) 807 WP_013710323.1 TIGR00282 family metallophosphoesterase -
  LHA31_RS03555 (LHA31_03555) rny 717889..719448 (-) 1560 WP_089978313.1 ribonuclease Y -
  LHA31_RS03560 (LHA31_03560) recA 719755..720792 (-) 1038 WP_035021910.1 recombinase RecA Machinery gene
  LHA31_RS03565 (LHA31_03565) - 720953..722213 (-) 1261 Protein_697 competence/damage-inducible protein A -
  LHA31_RS03570 (LHA31_03570) pgsA 722397..722978 (-) 582 WP_089978308.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LHA31_RS03575 (LHA31_03575) - 723064..723927 (-) 864 WP_411155651.1 helix-turn-helix domain-containing protein -
  LHA31_RS03580 (LHA31_03580) ymfI 724043..724768 (-) 726 WP_089978302.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 36970.18 Da        Isoelectric Point: 4.8433

>NTDB_id=614037 LHA31_RS03560 WP_035021910.1 719755..720792(-) (recA) [Carnobacterium viridans strain AB01]
MADDRKQALDAALKKIEKNFGKGSVMKLGEKVDTRISTVPSGSLALDVALGVGGFPRGRIIEVYGPESSGKTTVALHAVA
EVQKQGGIAAFIDAENALDPKYAAALGVDIDELLLSQPDTGEQGLEIADALVSSGAVDIVVIDSVAALVPRAEIEGEMGD
SHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGVMFGNPEITPGGRALKFYATIRLEVRRAEQIKQGTDIMGNR
TKIKVVKNKVAPPFRVAEVDIMYGEGISQVGELVDMGSEKDIIDKAGAWYSYGGERIGQGRENAKKFFKDNPELRAEVEQ
KVRAAYGIGEAGEVVEESETDLLED

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=614037 LHA31_RS03560 WP_035021910.1 719755..720792(-) (recA) [Carnobacterium viridans strain AB01]
ATGGCAGACGATCGTAAACAAGCATTAGATGCAGCGTTAAAAAAGATTGAAAAGAACTTTGGTAAAGGTTCCGTTATGAA
ACTTGGAGAAAAAGTTGATACACGTATTTCTACAGTCCCTAGTGGATCATTAGCATTAGATGTAGCATTGGGAGTTGGCG
GATTTCCAAGAGGAAGAATTATTGAAGTATATGGTCCTGAAAGTTCAGGTAAAACAACGGTAGCTTTGCATGCTGTTGCT
GAAGTTCAAAAACAAGGTGGAATTGCTGCATTTATTGATGCTGAAAATGCATTGGATCCAAAATACGCAGCTGCACTTGG
AGTAGATATTGACGAATTGCTGTTATCTCAACCAGATACAGGTGAACAAGGTTTGGAAATTGCAGATGCGTTGGTTTCCA
GTGGAGCAGTTGATATTGTTGTCATTGACTCAGTTGCTGCATTAGTACCACGTGCTGAAATTGAAGGAGAAATGGGAGAC
TCTCATGTAGGATTACAAGCTCGTTTGATGTCTCAGGCTTTACGTAAATTATCCGGTTCAATCAACAAAACAAAAACGAT
TGCTTTATTTATCAACCAAATTCGTGAAAAAGTTGGTGTTATGTTTGGTAACCCAGAAATTACACCAGGTGGACGTGCTT
TGAAATTCTATGCTACGATTCGTTTGGAAGTTAGAAGAGCTGAACAAATTAAACAAGGTACAGATATTATGGGTAATCGT
ACAAAAATCAAAGTAGTTAAAAATAAAGTTGCTCCACCTTTTAGAGTAGCTGAAGTAGATATCATGTATGGTGAAGGTAT
TTCTCAAGTAGGAGAACTTGTGGATATGGGATCAGAAAAAGATATCATTGATAAAGCAGGTGCATGGTACTCTTATGGTG
GCGAACGAATTGGCCAAGGGCGAGAAAATGCAAAAAAATTCTTCAAAGACAATCCTGAATTAAGAGCTGAAGTAGAACAA
AAAGTTCGTGCAGCTTATGGTATTGGAGAAGCTGGTGAAGTAGTAGAAGAGTCTGAAACTGATTTATTAGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H1BB01

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

79.539

100

0.8
  recA Bacillus subtilis subsp. subtilis str. 168

78.248

95.942

0.751
  recA Streptococcus mutans UA159

69.429

100

0.704
  recA Streptococcus mitis SK321

70.175

99.13

0.696
  recA Streptococcus mitis NCTC 12261

69.883

99.13

0.693
  recA Streptococcus pneumoniae Rx1

68.786

100

0.69
  recA Streptococcus pneumoniae D39

68.786

100

0.69
  recA Streptococcus pneumoniae R6

68.786

100

0.69
  recA Streptococcus pneumoniae TIGR4

68.786

100

0.69
  recA Streptococcus pyogenes NZ131

71.903

95.942

0.69
  recA Lactococcus lactis subsp. cremoris KW2

67.761

97.101

0.658
  recA Ralstonia pseudosolanacearum GMI1000

63.72

95.072

0.606
  recA Neisseria gonorrhoeae strain FA1090

63.222

95.362

0.603
  recA Neisseria gonorrhoeae MS11

63.222

95.362

0.603
  recA Neisseria gonorrhoeae MS11

63.222

95.362

0.603
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.691

94.783

0.594
  recA Acinetobacter baumannii D1279779

58.96

100

0.591
  recA Acinetobacter baylyi ADP1

58.333

100

0.588
  recA Glaesserella parasuis strain SC1401

62.305

93.043

0.58
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.923

94.203

0.574
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.878

95.362

0.571
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.443

93.623

0.557
  recA Vibrio cholerae strain A1552

59.443

93.623

0.557
  recA Pseudomonas stutzeri DSM 10701

59.259

93.913

0.557
  recA Helicobacter pylori 26695

58.055

95.362

0.554
  recA Helicobacter pylori strain NCTC11637

58.055

95.362

0.554