Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   J3U91_RS07150 Genome accession   NZ_CP084701
Coordinates   1355173..1356303 (-) Length   376 a.a.
NCBI ID   WP_002820341.1    Uniprot ID   D3LAK4
Organism   Oenococcus oeni strain AWRIB429     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1350173..1361303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3U91_RS07135 (J3U91_01471) - 1350832..1352679 (-) 1848 WP_002820338.1 ABC transporter ATP-binding protein -
  J3U91_RS07140 (J3U91_01472) - 1352672..1354423 (-) 1752 WP_002820339.1 ABC transporter ATP-binding protein -
  J3U91_RS07145 (J3U91_01473) trhA 1354469..1355122 (-) 654 WP_002820340.1 PAQR family membrane homeostasis protein TrhA -
  J3U91_RS07150 (J3U91_01474) recA 1355173..1356303 (-) 1131 WP_002820341.1 recombinase RecA Machinery gene
  J3U91_RS07155 (J3U91_01475) pgsA 1356420..1356980 (-) 561 WP_002820342.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  J3U91_RS07160 (J3U91_01476) - 1356977..1357951 (-) 975 WP_004164906.1 helix-turn-helix domain-containing protein -
  J3U91_RS07165 (J3U91_01477) yfmH 1357972..1359249 (-) 1278 WP_002820344.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  J3U91_RS07170 (J3U91_01478) - 1359239..1360492 (-) 1254 WP_002820345.1 M16 family metallopeptidase -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 40402.41 Da        Isoelectric Point: 4.7775

>NTDB_id=612524 J3U91_RS07150 WP_002820341.1 1355173..1356303(-) (recA) [Oenococcus oeni strain AWRIB429]
MASGRKAALDAALKKIEKDFGKGSIMRLGENVHTQIDVISTGSLKLDIALGVGGYPKGRIIEVFGPESSGKTTVALHAVA
EVQKQGGTAAYIDAENSLDAKYAQALGVNVDDLLLSQPDTGEQGLEIADDLVNSGAIDLLVIDSVAALVPRAEIEGEMGD
SHVGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKIGIMFGNPETTPGGRALKFYSTVRLEVRRSAQIKDGTNIVGNN
TKIKVVKNKVAPPFKVAEVDIMYGKGISQTGELIDLAVDKDIINKSGAWYAYQGEKIGQGRVNAISWLDSPEHKKEHDEI
FTSVRDQYGIGEKKDSDEDPGDNKKSKDSASDPFDDPNYNPKSSDPGDDLSDDDIY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=612524 J3U91_RS07150 WP_002820341.1 1355173..1356303(-) (recA) [Oenococcus oeni strain AWRIB429]
ATGGCTAGTGGAAGAAAAGCTGCACTCGATGCAGCATTAAAGAAAATTGAAAAAGATTTTGGTAAGGGATCGATTATGCG
TTTGGGTGAAAATGTTCATACACAGATCGATGTTATTTCAACAGGTTCTTTAAAACTCGATATTGCTTTAGGGGTTGGTG
GCTATCCGAAAGGAAGAATCATTGAAGTGTTCGGACCGGAATCTTCAGGTAAAACAACTGTTGCTTTGCATGCGGTTGCT
GAAGTCCAAAAACAGGGCGGCACGGCGGCTTATATCGATGCCGAAAACTCTTTGGATGCGAAATACGCGCAAGCTCTTGG
CGTAAATGTTGACGATTTGCTGCTTAGCCAACCGGATACCGGAGAACAGGGCTTGGAAATCGCTGATGATTTGGTTAATT
CCGGGGCAATCGATCTATTGGTTATCGATTCGGTCGCGGCTTTGGTCCCACGCGCTGAAATCGAAGGAGAAATGGGCGAT
TCTCATGTTGGTTTACAGGCTCGTTTAATGAGCCAGGCACTTCGGAAACTTGCCGGTACACTGAATAGAACCGGTACAAT
TGCAATTTTTATTAACCAGATTCGTGAAAAAATAGGAATTATGTTTGGAAATCCAGAGACAACTCCGGGTGGCCGTGCTT
TGAAATTTTACTCGACTGTTAGACTTGAAGTGCGTCGATCTGCTCAAATTAAAGATGGCACGAATATTGTTGGAAATAAT
ACCAAAATTAAAGTTGTTAAAAACAAAGTTGCTCCTCCGTTTAAAGTTGCCGAAGTTGACATTATGTACGGAAAAGGTAT
TAGCCAAACCGGAGAATTAATTGATCTTGCGGTTGATAAAGACATTATCAATAAGTCTGGTGCTTGGTATGCCTACCAAG
GAGAGAAAATTGGTCAAGGCCGTGTTAACGCTATTTCTTGGCTAGACAGTCCGGAACACAAAAAGGAACATGACGAAATT
TTCACTTCTGTCCGCGATCAATATGGAATTGGTGAAAAGAAGGATTCAGATGAAGATCCTGGAGACAATAAAAAGAGTAA
AGACTCTGCCTCGGACCCTTTCGATGATCCTAACTACAATCCTAAGTCGAGTGATCCCGGCGATGATTTATCCGACGATG
ATATTTATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D3LAK4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

76.276

88.564

0.676
  recA Streptococcus mitis NCTC 12261

66.667

94.149

0.628
  recA Streptococcus mitis SK321

66.384

94.149

0.625
  recA Streptococcus mutans UA159

66.384

94.149

0.625
  recA Streptococcus pneumoniae R6

67.341

92.021

0.62
  recA Streptococcus pneumoniae Rx1

67.341

92.021

0.62
  recA Streptococcus pneumoniae D39

67.341

92.021

0.62
  recA Streptococcus pneumoniae TIGR4

67.341

92.021

0.62
  recA Bacillus subtilis subsp. subtilis str. 168

70.122

87.234

0.612
  recA Streptococcus pyogenes NZ131

68.788

87.766

0.604
  recA Lactococcus lactis subsp. cremoris KW2

67.879

87.766

0.596
  recA Acinetobacter baumannii D1279779

63.303

86.968

0.551
  recA Acinetobacter baylyi ADP1

62.385

86.968

0.543
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.721

91.489

0.537
  recA Ralstonia pseudosolanacearum GMI1000

64.127

83.777

0.537
  recA Neisseria gonorrhoeae MS11

63.722

84.309

0.537
  recA Neisseria gonorrhoeae MS11

63.722

84.309

0.537
  recA Neisseria gonorrhoeae strain FA1090

63.722

84.309

0.537
  recA Vibrio cholerae strain A1552

62.5

85.106

0.532
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.5

85.106

0.532
  recA Pseudomonas stutzeri DSM 10701

61.875

85.106

0.527
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.55

86.968

0.527
  recA Helicobacter pylori strain NCTC11637

58.788

87.766

0.516
  recA Helicobacter pylori 26695

58.788

87.766

0.516
  recA Glaesserella parasuis strain SC1401

62.46

82.181

0.513
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.188

84.84

0.511