Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LGL96_RS04870 Genome accession   NZ_CP084656
Coordinates   1119187..1120260 (-) Length   357 a.a.
NCBI ID   WP_103862885.1    Uniprot ID   A0A221T6G1
Organism   Pectobacterium versatile strain SR1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1114187..1125260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LGL96_RS04855 (LGL96_04855) csrA 1115372..1115557 (-) 186 WP_005972168.1 carbon storage regulator CsrA -
  LGL96_RS04860 (LGL96_04860) alaS 1115882..1118509 (-) 2628 WP_103972176.1 alanine--tRNA ligase -
  LGL96_RS04865 (LGL96_04865) recX 1118647..1119141 (-) 495 WP_103972175.1 recombination regulator RecX -
  LGL96_RS04870 (LGL96_04870) recA 1119187..1120260 (-) 1074 WP_103862885.1 recombinase RecA Machinery gene
  LGL96_RS04875 (LGL96_04875) pncC 1120368..1120862 (-) 495 WP_119158326.1 nicotinamide-nucleotide amidase -
  LGL96_RS04880 (LGL96_04880) - 1121098..1121433 (-) 336 WP_103943748.1 hypothetical protein -
  LGL96_RS04885 (LGL96_04885) - 1121915..1122403 (+) 489 WP_225586733.1 SRPBCC family protein -
  LGL96_RS04890 (LGL96_04890) - 1122485..1123159 (+) 675 WP_103972173.1 MarC family NAAT transporter -
  LGL96_RS04895 (LGL96_04895) - 1123307..1123852 (+) 546 WP_223878571.1 PDC sensor domain-containing protein -
  LGL96_RS04900 (LGL96_04900) - 1123879..1124904 (+) 1026 WP_223878572.1 diguanylate cyclase -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38309.81 Da        Isoelectric Point: 5.0755

>NTDB_id=612344 LGL96_RS04870 WP_103862885.1 1119187..1120260(-) (recA) [Pectobacterium versatile strain SR1]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVG
SETRVKVVKNKVAAPFKQAEFQILYGEGINIHGELVDLGVKHKLIEKAGAWYSYNGDKIGQGKANACNFLKENPTIAAEL
DKKLREMLLHKGNELTPAAASNSRDEDEFAGEGNEEF

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=612344 LGL96_RS04870 WP_103862885.1 1119187..1120260(-) (recA) [Pectobacterium versatile strain SR1]
ATGGCTATTGATGAGAACAAACAAAAGGCACTTGCGGCAGCACTGGGCCAAATCGAAAAGCAATTTGGTAAAGGTTCTAT
CATGCGGTTGGGCGAGGATCGCTCAATGGATGTTGAAACCATTTCTACTGGTTCTTTGTCCCTTGATATTGCTCTGGGCG
CTGGTGGTTTACCGATGGGGCGTATCGTTGAGATTTATGGCCCGGAATCTTCCGGTAAAACAACGCTGACCTTACAGGTT
ATTGCTGCCGCTCAGCGCGAAGGCAAAACGTGTGCGTTTATCGATGCTGAGCATGCGCTGGACCCGATTTATGCGAAAAA
GCTTGGCGTAGATATCGATAACTTGCTGTGTTCTCAGCCGGATACCGGCGAGCAAGCGTTGGAGATCTGTGATGCACTAA
CGCGCTCCGGTGCTGTTGACGTTATCATCGTTGACTCCGTTGCGGCACTGACGCCGAAAGCCGAAATTGAAGGTGAAATC
GGCGACTCCCACATGGGGCTGGCTGCTCGTATGATGAGCCAGGCTATGCGTAAACTGGCGGGTAACCTGAAGCAAGCCAA
TACGCTGCTGATCTTCATTAACCAAATTCGTATGAAAATCGGTGTGATGTTCGGTAACCCTGAAACGACTACCGGTGGTA
ACGCACTGAAGTTTTACGCCTCTGTTCGTCTGGATATTCGTCGTACTGGCGCTATCAAGGAAGGCGAAGAAGTTGTCGGC
AGCGAAACCCGCGTGAAAGTGGTGAAGAATAAAGTAGCAGCACCGTTTAAACAGGCTGAATTCCAAATTCTGTACGGCGA
AGGCATCAATATCCACGGTGAGCTGGTTGACCTGGGTGTGAAACACAAACTGATCGAAAAAGCCGGTGCTTGGTATAGCT
ACAACGGCGATAAGATCGGTCAGGGTAAAGCCAATGCCTGCAATTTCCTGAAAGAGAACCCGACGATTGCTGCTGAACTG
GATAAGAAATTGCGTGAAATGCTGCTGCATAAAGGCAATGAACTGACGCCTGCCGCTGCCAGTAATAGCCGTGACGAAGA
TGAATTCGCTGGTGAAGGCAACGAAGAGTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A221T6G1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

83.38

99.44

0.829
  recA Vibrio cholerae O1 biovar El Tor strain E7946

83.38

99.44

0.829
  recA Pseudomonas stutzeri DSM 10701

74.336

94.958

0.706
  recA Glaesserella parasuis strain SC1401

69.516

98.319

0.683
  recA Acinetobacter baylyi ADP1

70.145

96.639

0.678
  recA Acinetobacter baumannii D1279779

72.727

92.437

0.672
  recA Neisseria gonorrhoeae MS11

69.632

91.317

0.636
  recA Neisseria gonorrhoeae MS11

69.632

91.317

0.636
  recA Neisseria gonorrhoeae strain FA1090

69.632

91.317

0.636
  recA Ralstonia pseudosolanacearum GMI1000

67.976

92.717

0.63
  recA Streptococcus pneumoniae Rx1

60

99.44

0.597
  recA Streptococcus pneumoniae TIGR4

60

99.44

0.597
  recA Streptococcus pneumoniae R6

60

99.44

0.597
  recA Streptococcus pneumoniae D39

60

99.44

0.597
  recA Streptococcus mitis SK321

59.718

99.44

0.594
  recA Streptococcus mitis NCTC 12261

59.437

99.44

0.591
  recA Helicobacter pylori strain NCTC11637

62.691

91.597

0.574
  recA Helicobacter pylori 26695

62.385

91.597

0.571
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.08

91.597

0.569
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.299

93.838

0.566
  recA Streptococcus pyogenes NZ131

62.154

91.036

0.566
  recA Streptococcus mutans UA159

62.154

91.036

0.566
  recA Lactococcus lactis subsp. cremoris KW2

62.229

90.476

0.563
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

89.916

0.56
  recA Latilactobacillus sakei subsp. sakei 23K

61.231

91.036

0.557
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.589

91.317

0.535