Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LDX52_RS03240 Genome accession   NZ_CP084384
Coordinates   652217..653329 (+) Length   370 a.a.
NCBI ID   WP_267271663.1    Uniprot ID   -
Organism   Lactobacillus helsingborgensis strain IBH003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 647217..658329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDX52_RS03215 (LDX52_03210) pgsA 647936..648496 (+) 561 WP_038521864.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LDX52_RS03220 (LDX52_03215) - 648656..649834 (+) 1179 WP_267271662.1 ABC transporter ATP-binding protein -
  LDX52_RS03225 (LDX52_03220) - 649836..650459 (+) 624 WP_038521870.1 ABC transporter permease -
  LDX52_RS03230 (LDX52_03225) - 650473..651408 (+) 936 WP_038521872.1 osmoprotectant ABC transporter substrate-binding protein -
  LDX52_RS03235 (LDX52_03230) - 651408..652073 (+) 666 WP_038521875.1 ABC transporter permease -
  LDX52_RS03240 (LDX52_03235) recA 652217..653329 (+) 1113 WP_267271663.1 recombinase RecA Machinery gene
  LDX52_RS03245 (LDX52_03240) rny 653462..655093 (+) 1632 WP_038521880.1 ribonuclease Y -
  LDX52_RS03250 (LDX52_03245) - 655199..656353 (+) 1155 WP_038521883.1 glycosyltransferase family 4 protein -
  LDX52_RS03255 (LDX52_03250) - 656390..657052 (-) 663 WP_199282769.1 YigZ family protein -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39903.35 Da        Isoelectric Point: 6.0371

>NTDB_id=610896 LDX52_RS03240 WP_267271663.1 652217..653329(+) (recA) [Lactobacillus helsingborgensis strain IBH003]
MAKDEKKAALENALKKIEKNFGKGAVMRMGDKADTKISTIPSGSLALDAALGVGGYPRGRIVEIYGPESSGKTTVALHAV
AEVQKRGGTAAYIDAENAMDPAYAEALGVDVDSLILSQPNTGEEGLQIADTLITSGAIDILVVDSVAALVPQAEIDGEMG
DSHVGLQARLMSQALRKLSGNINKTKTIAIFINQIREKVGIMFGNPETTPGGRALKFYATIRLEIRRAEKIKQTGGEITG
NRVKIKVVKNKVAPPFKVAEVDMMYGKGISQSGELLDMAADKDIIAKAGSWYSYNDERIGQGRENAKKYLEDNPEVYDEV
QKQVRQAYGIDEESVAEREDPEKIKEKKAKNAANTEKEASAKKEADSKSN

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=610896 LDX52_RS03240 WP_267271663.1 652217..653329(+) (recA) [Lactobacillus helsingborgensis strain IBH003]
TTGGCCAAAGATGAAAAAAAGGCCGCATTGGAAAATGCGCTTAAGAAAATTGAGAAAAATTTTGGTAAAGGCGCCGTTAT
GCGAATGGGCGATAAGGCCGATACTAAGATTTCGACTATTCCCTCAGGCTCGCTTGCTCTTGATGCAGCCTTGGGTGTTG
GCGGCTATCCCCGGGGCAGAATTGTAGAAATATATGGACCAGAGTCTTCTGGTAAAACTACTGTTGCGCTACATGCAGTA
GCTGAAGTGCAAAAAAGAGGCGGGACTGCTGCCTATATTGATGCTGAAAATGCCATGGATCCGGCATATGCCGAAGCTTT
AGGCGTTGATGTTGACTCACTAATCTTATCTCAACCCAATACTGGTGAAGAAGGATTGCAAATTGCTGATACTTTAATTA
CAAGTGGCGCAATTGATATTTTAGTTGTTGATTCGGTTGCAGCACTTGTACCTCAAGCCGAAATTGACGGAGAAATGGGC
GATAGCCATGTTGGTCTGCAAGCTCGTTTGATGAGCCAAGCCCTCCGTAAACTTTCTGGTAATATCAATAAGACTAAAAC
TATTGCAATCTTTATTAACCAAATTCGTGAAAAAGTCGGCATTATGTTTGGTAATCCTGAAACTACCCCTGGTGGTCGTG
CGCTTAAGTTCTACGCAACTATTCGCTTGGAGATTAGAAGAGCCGAAAAGATTAAACAAACTGGTGGAGAAATCACCGGT
AACCGTGTGAAAATTAAAGTTGTCAAAAATAAGGTTGCTCCACCTTTTAAAGTTGCTGAAGTTGATATGATGTACGGCAA
AGGTATCTCTCAAAGTGGTGAACTTCTTGATATGGCAGCCGACAAAGACATTATCGCAAAGGCTGGTTCATGGTATTCAT
ATAACGATGAACGAATTGGACAAGGGCGCGAAAACGCTAAAAAGTATCTGGAAGATAATCCGGAAGTTTATGATGAAGTG
CAGAAACAGGTTCGTCAGGCCTACGGTATTGACGAGGAATCAGTTGCTGAGCGCGAAGACCCAGAAAAAATAAAAGAGAA
GAAAGCTAAAAACGCTGCAAATACAGAAAAGGAAGCTTCTGCTAAAAAAGAAGCCGACAGCAAAAGCAATTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

77.843

92.703

0.722
  recA Streptococcus pneumoniae TIGR4

67.135

96.216

0.646
  recA Streptococcus pneumoniae Rx1

67.135

96.216

0.646
  recA Streptococcus pneumoniae D39

67.135

96.216

0.646
  recA Streptococcus pneumoniae R6

67.135

96.216

0.646
  recA Streptococcus mutans UA159

67.232

95.676

0.643
  recA Streptococcus mitis NCTC 12261

68.713

92.432

0.635
  recA Streptococcus mitis SK321

68.713

92.432

0.635
  recA Bacillus subtilis subsp. subtilis str. 168

69.486

89.459

0.622
  recA Streptococcus pyogenes NZ131

69.301

88.919

0.616
  recA Lactococcus lactis subsp. cremoris KW2

66.967

90

0.603
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.11

88.649

0.559
  recA Neisseria gonorrhoeae MS11

61.094

88.919

0.543
  recA Neisseria gonorrhoeae MS11

61.094

88.919

0.543
  recA Neisseria gonorrhoeae strain FA1090

61.094

88.919

0.543
  recA Helicobacter pylori 26695

57.143

92.703

0.53
  recA Helicobacter pylori strain NCTC11637

57.143

92.703

0.53
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.353

91.892

0.527
  recA Acinetobacter baumannii D1279779

59.568

87.568

0.522
  recA Acinetobacter baylyi ADP1

59.752

87.297

0.522
  recA Pseudomonas stutzeri DSM 10701

59.627

87.027

0.519
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.824

87.297

0.514
  recA Glaesserella parasuis strain SC1401

56.928

89.73

0.511
  recA Ralstonia pseudosolanacearum GMI1000

59.873

84.865

0.508
  recA Vibrio cholerae O1 biovar El Tor strain E7946

57.895

87.297

0.505
  recA Vibrio cholerae strain A1552

57.895

87.297

0.505