Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LDZ27_RS12210 Genome accession   NZ_CP084265
Coordinates   2609182..2610252 (-) Length   356 a.a.
NCBI ID   WP_244814335.1    Uniprot ID   -
Organism   Caballeronia sp. Lep1P3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2604182..2615252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDZ27_RS12190 sucD 2604913..2605794 (-) 882 WP_244814332.1 succinate--CoA ligase subunit alpha -
  LDZ27_RS12195 sucC 2605892..2607058 (-) 1167 WP_244814333.1 ADP-forming succinate--CoA ligase subunit beta -
  LDZ27_RS12200 - 2607178..2607825 (-) 648 WP_244814334.1 DUF2889 domain-containing protein -
  LDZ27_RS29020 recX 2607948..2609162 (-) 1215 WP_370653311.1 recombination regulator RecX -
  LDZ27_RS12210 recA 2609182..2610252 (-) 1071 WP_244814335.1 recombinase RecA Machinery gene
  LDZ27_RS12215 - 2610219..2610518 (-) 300 WP_244814336.1 hypothetical protein -
  LDZ27_RS12220 - 2610525..2611253 (+) 729 WP_244814337.1 response regulator transcription factor -
  LDZ27_RS12225 - 2611267..2612859 (+) 1593 WP_244814338.1 sensor histidine kinase -
  LDZ27_RS12230 - 2613157..2614815 (+) 1659 WP_244814339.1 MFS transporter -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 37838.38 Da        Isoelectric Point: 5.0588

>NTDB_id=610377 LDZ27_RS12210 WP_244814335.1 2609182..2610252(-) (recA) [Caballeronia sp. Lep1P3]
MEESKKGPAGMTAEKSKALAAALSQIEKQFGKGSIMRLGAGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESS
GKTTLTLQVIAEMQKLGGTAAFIDAEHALDVQYAAKLGVNIPELLISQPDTGEQALEITDALVRSGSIDMIVIDSVAALV
PKAEIEGEMGDSLPGLQARLMSQALRKLTGSIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGS
IKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKLVDKAGAWYSYNGDRIGQGKDNAREFLR
ENPDIAREIENKIRESLGVAALADGVATGAAVAGDE

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=610377 LDZ27_RS12210 WP_244814335.1 2609182..2610252(-) (recA) [Caballeronia sp. Lep1P3]
ATGGAAGAAAGCAAGAAAGGCCCGGCTGGAATGACTGCGGAAAAGAGCAAGGCCCTGGCCGCCGCGCTCTCGCAGATCGA
AAAGCAATTCGGCAAAGGGTCGATCATGCGGCTCGGCGCGGGTGAGGCGGTCGAAGACATTCAGGTTGTGTCCACCGGTT
CGCTCGGGCTGGATATCGCGCTCGGCGTGGGCGGCTTGCCGCGCGGCCGTGTCGTGGAAATCTACGGTCCGGAATCGTCG
GGCAAGACCACGCTCACGCTGCAAGTGATCGCCGAAATGCAAAAGCTCGGCGGCACGGCGGCGTTCATCGACGCGGAACA
CGCGCTCGACGTGCAATACGCAGCCAAGCTCGGCGTGAACATTCCGGAACTGCTGATCTCGCAGCCGGACACGGGCGAGC
AGGCGCTGGAAATCACGGACGCGCTGGTGCGCTCCGGCTCCATCGACATGATCGTCATCGACTCGGTGGCGGCGCTCGTG
CCGAAGGCGGAAATCGAAGGCGAAATGGGCGACTCGCTGCCCGGTTTGCAGGCGCGTCTGATGTCGCAGGCGCTGCGCAA
GCTCACCGGCTCCATCAAGCGCACGAACTGCCTTGTCATCTTCATCAACCAGATTCGCATGAAGATCGGCGTGATGTTCG
GCAACCCGGAAACCACCACGGGCGGCAACGCGCTGAAGTTCTACTCGTCGGTGCGTCTGGACATTCGCCGTATCGGTTCC
ATCAAGAAGAACGACGAAGTCATCGGCAACGAAACGCGCGTGAAGGTCGTGAAGAACAAGGTCTCGCCGCCGTTCCGCGA
AGCTATCTTCGACATTCTGTACGGCGAGGGCATTTCGCGTCAGGGCGAGATCATCGATCTGGGCGTGCAGGCCAAGCTCG
TCGACAAGGCAGGCGCCTGGTACAGCTATAACGGCGATCGCATCGGTCAGGGCAAGGACAACGCGCGTGAATTCCTGCGC
GAAAATCCGGACATCGCGCGCGAGATCGAGAACAAGATCCGCGAATCGCTCGGTGTGGCGGCGCTGGCGGATGGCGTAGC
CACGGGCGCAGCAGTGGCGGGCGACGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(17-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

84.795

96.067

0.815
  recA Neisseria gonorrhoeae strain FA1090

73.86

92.416

0.683
  recA Neisseria gonorrhoeae MS11

73.86

92.416

0.683
  recA Neisseria gonorrhoeae MS11

73.86

92.416

0.683
  recA Acinetobacter baylyi ADP1

74.006

91.854

0.68
  recA Pseudomonas stutzeri DSM 10701

72.81

92.978

0.677
  recA Glaesserella parasuis strain SC1401

69.477

96.629

0.671
  recA Acinetobacter baumannii D1279779

72.783

91.854

0.669
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.477

91.854

0.666
  recA Vibrio cholerae strain A1552

72.477

91.854

0.666
  recA Bacillus subtilis subsp. subtilis str. 168

66.055

91.854

0.607
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.046

92.416

0.601
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.69

94.382

0.601
  recA Helicobacter pylori 26695

64.724

91.573

0.593
  recA Helicobacter pylori strain NCTC11637

64.417

91.573

0.59
  recA Latilactobacillus sakei subsp. sakei 23K

62.5

92.135

0.576
  recA Streptococcus mutans UA159

62.121

92.697

0.576
  recA Streptococcus mitis NCTC 12261

61.027

92.978

0.567
  recA Streptococcus pneumoniae Rx1

60.725

92.978

0.565
  recA Streptococcus mitis SK321

60.725

92.978

0.565
  recA Streptococcus pneumoniae D39

60.725

92.978

0.565
  recA Streptococcus pneumoniae R6

60.725

92.978

0.565
  recA Streptococcus pneumoniae TIGR4

60.725

92.978

0.565
  recA Lactococcus lactis subsp. cremoris KW2

60.06

93.539

0.562
  recA Streptococcus pyogenes NZ131

60.486

92.416

0.559
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

90.169

0.553