Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LDZ26_RS02130 Genome accession   NZ_CP084260
Coordinates   442895..443965 (+) Length   356 a.a.
NCBI ID   WP_305038311.1    Uniprot ID   -
Organism   Caballeronia sp. SL2Y3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 437895..448965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDZ26_RS02115 - 438431..440089 (-) 1659 WP_244847962.1 MFS transporter -
  LDZ26_RS02120 - 440317..441912 (-) 1596 WP_244847963.1 sensor histidine kinase -
  LDZ26_RS02125 - 441925..442632 (-) 708 WP_370650627.1 response regulator -
  LDZ26_RS02130 recA 442895..443965 (+) 1071 WP_305038311.1 recombinase RecA Machinery gene
  LDZ26_RS02135 recX 443985..445163 (+) 1179 WP_370650628.1 recombination regulator RecX -
  LDZ26_RS02140 - 445284..445910 (+) 627 WP_244847965.1 DUF2889 domain-containing protein -
  LDZ26_RS02145 sucC 446043..447209 (+) 1167 WP_244847966.1 ADP-forming succinate--CoA ligase subunit beta -
  LDZ26_RS02150 sucD 447309..448190 (+) 882 WP_159835338.1 succinate--CoA ligase subunit alpha -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 37954.46 Da        Isoelectric Point: 4.9608

>NTDB_id=610358 LDZ26_RS02130 WP_305038311.1 442895..443965(+) (recA) [Caballeronia sp. SL2Y3]
MEESKKGPAGMTAEKSKALAAALSQIEKQFGKGSIMRLGAGEAVEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESS
GKTTLTLQVIAEMQKIGGTAAFIDAEHALDVQYAQKLGVNVQELLISQPDTGEQALEIADALVRSGSIDMIVIDSVAALV
PKAEIEGEMGDSLPGLQARLMSQALRKLTGTIKRTNCLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGS
IKKNDEVIGNETRVKVVKNKVSPPFREAIFDILYGEGISRQGEIIDLGVQAKLVDKAGAWYSYNGDRIGQGKDNAREFLR
ENPDIAREIENKIRESLGVAALADGVTAGAAVADDE

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=610358 LDZ26_RS02130 WP_305038311.1 442895..443965(+) (recA) [Caballeronia sp. SL2Y3]
ATGGAAGAAAGCAAGAAAGGCCCGGCTGGCATGACTGCGGAAAAGAGCAAGGCCCTCGCTGCCGCCCTCTCGCAGATCGA
AAAGCAATTCGGCAAAGGGTCGATCATGCGGCTCGGCGCGGGTGAGGCGGTCGAAGACATTCAGGTCGTGTCCACCGGCT
CGCTCGGACTGGATATCGCGCTCGGCGTGGGCGGCCTGCCGCGCGGCCGCGTCGTCGAGATCTACGGTCCGGAATCGTCG
GGTAAGACCACGCTCACGCTGCAGGTGATCGCCGAAATGCAGAAGATCGGCGGCACGGCGGCATTCATCGACGCGGAACA
CGCGCTCGACGTGCAATACGCGCAAAAGCTCGGCGTGAACGTGCAGGAACTGCTGATCTCGCAGCCCGACACGGGCGAGC
AGGCGCTGGAAATCGCGGACGCGCTGGTGCGCTCGGGTTCCATCGACATGATCGTCATCGACTCCGTCGCGGCGCTCGTG
CCGAAGGCGGAAATCGAAGGCGAAATGGGCGACTCGCTGCCGGGTCTGCAAGCTCGCCTGATGTCGCAGGCGCTGCGCAA
GCTCACCGGAACCATCAAGCGCACGAACTGCCTCGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCG
GCAACCCGGAAACCACCACGGGCGGCAACGCGCTGAAGTTTTATTCGTCGGTGCGTCTGGACATTCGCCGTATCGGTTCC
ATCAAGAAGAACGACGAAGTGATAGGCAACGAAACGCGCGTCAAGGTGGTGAAGAACAAGGTGTCGCCACCGTTCCGCGA
AGCCATCTTCGACATTCTGTACGGCGAAGGCATTTCGCGTCAGGGCGAAATCATCGACCTGGGCGTGCAGGCCAAACTCG
TCGACAAGGCGGGCGCGTGGTACAGCTATAACGGCGATCGCATCGGTCAGGGCAAGGACAACGCGCGAGAATTCCTGCGC
GAGAACCCGGACATCGCGCGCGAGATCGAGAACAAGATTCGCGAATCGCTGGGTGTGGCGGCGCTGGCGGACGGTGTCAC
CGCGGGCGCAGCAGTAGCGGACGACGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(17-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

83.099

99.719

0.829
  recA Pseudomonas stutzeri DSM 10701

71.014

96.91

0.688
  recA Neisseria gonorrhoeae MS11

74.164

92.416

0.685
  recA Neisseria gonorrhoeae MS11

74.164

92.416

0.685
  recA Neisseria gonorrhoeae strain FA1090

74.164

92.416

0.685
  recA Acinetobacter baylyi ADP1

74.006

91.854

0.68
  recA Acinetobacter baumannii D1279779

69.942

97.191

0.68
  recA Glaesserella parasuis strain SC1401

69.477

96.629

0.671
  recA Vibrio cholerae strain A1552

72.171

91.854

0.663
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.171

91.854

0.663
  recA Bacillus subtilis subsp. subtilis str. 168

66.361

91.854

0.61
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.046

92.416

0.601
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.69

94.382

0.601
  recA Helicobacter pylori 26695

64.724

91.573

0.593
  recA Helicobacter pylori strain NCTC11637

64.417

91.573

0.59
  recA Latilactobacillus sakei subsp. sakei 23K

62.805

92.135

0.579
  recA Streptococcus mitis SK321

58.79

97.472

0.573
  recA Streptococcus mutans UA159

61.515

92.697

0.57
  recA Streptococcus mitis NCTC 12261

60.423

92.978

0.562
  recA Lactococcus lactis subsp. cremoris KW2

60.06

93.539

0.562
  recA Streptococcus pneumoniae Rx1

60.121

92.978

0.559
  recA Streptococcus pneumoniae D39

60.121

92.978

0.559
  recA Streptococcus pneumoniae R6

60.121

92.978

0.559
  recA Streptococcus pneumoniae TIGR4

60.121

92.978

0.559
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

90.169

0.553
  recA Streptococcus pyogenes NZ131

59.878

92.416

0.553