Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LDX55_RS02670 Genome accession   NZ_CP084249
Coordinates   638309..639355 (+) Length   348 a.a.
NCBI ID   WP_034532137.1    Uniprot ID   A0A837ADZ1
Organism   Apilactobacillus kunkeei strain IBH001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 633309..644355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDX55_RS02645 (LDX55_02660) - 633618..634892 (+) 1275 WP_034534322.1 pitrilysin family protein -
  LDX55_RS02650 (LDX55_02665) - 634882..636138 (+) 1257 WP_051592202.1 pitrilysin family protein -
  LDX55_RS02655 (LDX55_02670) - 636217..637071 (+) 855 WP_034534365.1 RodZ domain-containing protein -
  LDX55_RS02660 (LDX55_02675) pgsA 637119..637706 (+) 588 WP_034532136.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LDX55_RS02665 (LDX55_02680) - 637751..638218 (+) 468 WP_051592201.1 CinA family protein -
  LDX55_RS02670 (LDX55_02685) recA 638309..639355 (+) 1047 WP_034532137.1 recombinase RecA Machinery gene
  LDX55_RS02675 (LDX55_02690) rny 639567..641114 (+) 1548 WP_286171409.1 ribonuclease Y -
  LDX55_RS02680 (LDX55_02695) - 641194..641994 (+) 801 WP_034534318.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37412.22 Da        Isoelectric Point: 4.6535

>NTDB_id=610321 LDX55_RS02670 WP_034532137.1 638309..639355(+) (recA) [Apilactobacillus kunkeei strain IBH001]
MADERKAALDGALKRIEKEFGKGSIMRMGDRGDTRISTVPTGSLALDNALGVGGFPRGRIVEIYGPESSGKTTIALQAVA
EVQKQGGTAAYIDAENALDPVYATNLGVNIDDLLLSQPDTGEQGLQICDALVSSGAIDIVVVDSVAALVPRAEIEGEMGD
AHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEIRRAEQIKDGTDIIGNR
TKIKVAKNKVAPPFKRAEVDIMYGQGISQTGELVDMAVEQDIIGKSGSWYSYGEERIGQGRENAKQFLQDNPDKMEEINK
KVRAAYGMGEDDSESGEAEQTSLDTGEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=610321 LDX55_RS02670 WP_034532137.1 638309..639355(+) (recA) [Apilactobacillus kunkeei strain IBH001]
ATGGCTGATGAACGAAAAGCGGCTCTAGATGGTGCCTTAAAACGAATTGAAAAAGAATTCGGTAAAGGTTCAATCATGAG
AATGGGAGACCGTGGAGATACTAGAATTTCCACTGTACCAACAGGTTCCTTAGCACTTGATAATGCATTAGGTGTTGGAG
GATTCCCACGAGGAAGAATTGTTGAAATTTATGGACCTGAAAGTTCAGGTAAGACTACCATTGCGCTACAAGCTGTTGCG
GAAGTACAAAAACAAGGTGGAACAGCAGCATACATTGATGCTGAAAATGCTTTGGATCCAGTATATGCTACCAACCTAGG
GGTAAACATTGATGATTTACTTCTATCACAACCTGATACTGGTGAACAAGGTCTACAAATTTGTGACGCCCTTGTATCTA
GTGGTGCCATTGATATCGTAGTTGTCGATTCAGTTGCAGCTTTAGTACCTAGAGCTGAAATTGAAGGTGAAATGGGTGAT
GCTCACGTTGGTTTGCAAGCTCGTTTAATGTCACAAGCACTACGTAAGTTATCTGGATCAATTAACAAGACTAAGACTAT
TGCTCTATTTATTAACCAAATTAGAGAAAAAGTTGGTGTTATGTTTGGTAACCCAGAAACTACACCTGGTGGACGTGCTC
TTAAGTTCTACTCAACTATCAGACTAGAAATCAGAAGAGCTGAACAAATTAAAGATGGTACTGACATTATTGGTAACAGA
ACTAAGATTAAAGTTGCCAAGAATAAGGTAGCTCCTCCATTCAAGCGTGCCGAAGTTGATATCATGTACGGTCAAGGTAT
TTCACAAACTGGTGAATTAGTTGATATGGCCGTTGAACAAGACATCATTGGCAAGTCTGGTTCATGGTATTCATACGGTG
AAGAAAGAATTGGTCAAGGTCGTGAAAACGCAAAACAATTCTTACAAGATAATCCGGACAAAATGGAAGAAATTAACAAA
AAAGTTCGTGCTGCATACGGCATGGGCGAAGACGATTCTGAATCGGGTGAAGCTGAACAAACAAGTTTGGACACTGGTGA
AGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A837ADZ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

80.966

100

0.819
  recA Bacillus subtilis subsp. subtilis str. 168

76.22

94.253

0.718
  recA Streptococcus mutans UA159

67.435

99.713

0.672
  recA Streptococcus mitis SK321

65.812

100

0.664
  recA Streptococcus mitis NCTC 12261

65.812

100

0.664
  recA Streptococcus pneumoniae Rx1

67.062

96.839

0.649
  recA Streptococcus pneumoniae D39

67.062

96.839

0.649
  recA Streptococcus pneumoniae R6

67.062

96.839

0.649
  recA Streptococcus pneumoniae TIGR4

67.062

96.839

0.649
  recA Streptococcus pyogenes NZ131

67.976

95.115

0.647
  recA Lactococcus lactis subsp. cremoris KW2

67.164

96.264

0.647
  recA Neisseria gonorrhoeae strain FA1090

63.83

94.54

0.603
  recA Neisseria gonorrhoeae MS11

63.83

94.54

0.603
  recA Neisseria gonorrhoeae MS11

63.83

94.54

0.603
  recA Ralstonia pseudosolanacearum GMI1000

64.856

89.943

0.583
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.094

94.54

0.578
  recA Acinetobacter baylyi ADP1

61.61

92.816

0.572
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.245

93.966

0.566
  recA Acinetobacter baumannii D1279779

60.991

92.816

0.566
  recA Glaesserella parasuis strain SC1401

61.371

92.241

0.566
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.143

98.563

0.563
  recA Vibrio cholerae strain A1552

60.681

92.816

0.563
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.681

92.816

0.563
  recA Pseudomonas stutzeri DSM 10701

60.185

93.103

0.56
  recA Helicobacter pylori 26695

56.364

94.828

0.534
  recA Helicobacter pylori strain NCTC11637

56.364

94.828

0.534