Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LDB27_RS05030 Genome accession   NZ_CP084216
Coordinates   1042431..1043492 (+) Length   353 a.a.
NCBI ID   WP_000963150.1    Uniprot ID   A0A5I0YPS8
Organism   Salmonella sp. JXY0409-18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1037431..1048492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDB27_RS05000 (LDB27_05000) srlB 1038134..1038496 (-) 363 WP_000111553.1 PTS glucitol/sorbitol transporter subunit IIA -
  LDB27_RS05005 (LDB27_05005) - 1038508..1039479 (-) 972 WP_001527957.1 PTS glucitol/sorbitol transporter subunit IIB -
  LDB27_RS05010 (LDB27_05010) srlA 1039476..1040039 (-) 564 WP_000573333.1 PTS glucitol/sorbitol transporter subunit IIC -
  LDB27_RS05015 (LDB27_05015) mltB 1040292..1041371 (+) 1080 WP_000476811.1 lytic murein transglycosylase B -
  LDB27_RS05020 (LDB27_05020) - 1041409..1041654 (-) 246 WP_000053776.1 hypothetical protein -
  LDB27_RS05025 (LDB27_05025) pncC 1041849..1042346 (+) 498 WP_000132239.1 nicotinamide-nucleotide amidase -
  LDB27_RS05030 (LDB27_05030) recA 1042431..1043492 (+) 1062 WP_000963150.1 recombinase RecA Machinery gene
  LDB27_RS05035 (LDB27_05035) recX 1043609..1044109 (+) 501 WP_001294862.1 recombination regulator RecX -
  LDB27_RS05040 (LDB27_05040) alaS 1044345..1046975 (+) 2631 WP_000047221.1 alanine--tRNA ligase -
  LDB27_RS05045 (LDB27_05045) csrA 1047210..1047395 (+) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37944.30 Da        Isoelectric Point: 4.8055

>NTDB_id=610134 LDB27_RS05030 WP_000963150.1 1042431..1043492(+) (recA) [Salmonella sp. JXY0409-18]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGKANATTWLKENPATAKEI
EKRVRELLLSNQNATPDFAVDDSEGVAETNEDF

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=610134 LDB27_RS05030 WP_000963150.1 1042431..1043492(+) (recA) [Salmonella sp. JXY0409-18]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAAATTGAAAAGCAATTTGGTAAAGGCTCCAT
CATGCGTCTGGGTGAAGACCGTTCTATGGATGTGGAAACTATCTCCACCGGTTCGCTTTCACTGGATATCGCACTCGGTG
CGGGCGGTCTGCCGATGGGGCGTATCGTCGAAATTTACGGGCCGGAATCTTCCGGTAAAACGACCCTGACGCTACAGGTG
ATTGCCGCTGCGCAGCGTGAAGGTAAAACCTGTGCGTTTATCGATGCGGAACACGCGCTTGACCCTGTTTACGCACGCAA
GCTGGGCGTCGATATCGATAACCTGCTCTGTTCTCAGCCGGATACCGGCGAGCAGGCGCTGGAAATCTGTGACGCGCTGG
CGCGTTCAGGCGCGGTGGACGTCATTGTGGTCGACTCCGTAGCGGCGCTAACGCCGAAAGCGGAAATCGAAGGCGAAATT
GGCGACTCTCACATGGGCCTCGCGGCGCGTATGATGAGCCAGGCGATGCGTAAGCTGGCGGGGAACCTGAAACAGTCCAA
CACGCTGTTGATTTTCATCAACCAGATCCGTATGAAGATTGGCGTGATGTTCGGCAACCCGGAAACCACCACCGGCGGTA
ACGCTCTGAAATTCTACGCCTCTGTTCGTCTTGATATCCGTCGTATTGGCGCGGTGAAAGAGGGCGATAATGTCGTGGGT
AGCGAAACGCGTGTGAAAGTGGTGAAAAACAAAATCGCCGCGCCGTTTAAGCAGGCCGAGTTCCAGATCCTCTACGGCGA
AGGCATCAACTTCTATGGCGAACTGGTTGATCTGGGCGTGAAAGAGAAGCTGATCGAGAAAGCGGGCGCATGGTACAGCT
ACAACGGCGAGAAGATTGGCCAGGGCAAAGCGAACGCGACTACCTGGCTGAAAGAGAACCCGGCGACAGCGAAAGAGATC
GAGAAAAGGGTTCGTGAATTACTGTTGAGTAATCAGAATGCCACGCCCGATTTCGCCGTTGACGATAGCGAAGGCGTTGC
AGAAACCAACGAAGATTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0YPS8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

82.081

98.017

0.805
  recA Vibrio cholerae O1 biovar El Tor strain E7946

82.081

98.017

0.805
  recA Pseudomonas stutzeri DSM 10701

74.481

95.467

0.711
  recA Acinetobacter baylyi ADP1

73.373

95.751

0.703
  recA Acinetobacter baumannii D1279779

74.695

92.918

0.694
  recA Glaesserella parasuis strain SC1401

69.452

98.3

0.683
  recA Ralstonia pseudosolanacearum GMI1000

68.882

93.768

0.646
  recA Neisseria gonorrhoeae MS11

69.018

92.351

0.637
  recA Neisseria gonorrhoeae MS11

69.018

92.351

0.637
  recA Neisseria gonorrhoeae strain FA1090

69.018

92.351

0.637
  recA Streptococcus mitis SK321

59.714

99.15

0.592
  recA Streptococcus mitis NCTC 12261

59.714

99.15

0.592
  recA Helicobacter pylori strain NCTC11637

61.424

95.467

0.586
  recA Helicobacter pylori 26695

61.128

95.467

0.584
  recA Streptococcus pneumoniae TIGR4

62.848

91.501

0.575
  recA Streptococcus pneumoniae Rx1

62.848

91.501

0.575
  recA Streptococcus pneumoniae D39

62.848

91.501

0.575
  recA Streptococcus pneumoniae R6

62.848

91.501

0.575
  recA Lactococcus lactis subsp. cremoris KW2

62.539

91.501

0.572
  recA Streptococcus pyogenes NZ131

62.154

92.068

0.572
  recA Bacillus subtilis subsp. subtilis str. 168

62.928

90.935

0.572
  recA Streptococcus mutans UA159

61.846

92.068

0.569
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.728

91.785

0.567
  recA Latilactobacillus sakei subsp. sakei 23K

60.923

92.068

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

90.935

0.558
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.337

94.051

0.558