Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   Dongsha4_RS15300 Genome accession   NZ_CP084098
Coordinates   3557918..3558994 (-) Length   358 a.a.
NCBI ID   WP_330203177.1    Uniprot ID   -
Organism   Cyanobacterium sp. Dongsha4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3552918..3563994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Dongsha4_RS15270 (Dongsha4_15255) groES 3553016..3553327 (+) 312 WP_015218964.1 co-chaperone GroES -
  Dongsha4_RS15275 (Dongsha4_15260) groL 3553491..3555116 (+) 1626 WP_330203172.1 chaperonin GroEL -
  Dongsha4_RS15280 (Dongsha4_15265) - 3555182..3555484 (+) 303 WP_330203173.1 hypothetical protein -
  Dongsha4_RS15285 (Dongsha4_15270) - 3555472..3555687 (+) 216 WP_330203174.1 hypothetical protein -
  Dongsha4_RS15290 (Dongsha4_15275) - 3555768..3556406 (+) 639 WP_330203175.1 histidine phosphatase family protein -
  Dongsha4_RS15295 (Dongsha4_15280) - 3556559..3557740 (+) 1182 WP_330203176.1 RtcB family protein -
  Dongsha4_RS15300 (Dongsha4_15285) recA 3557918..3558994 (-) 1077 WP_330203177.1 recombinase RecA Machinery gene
  Dongsha4_RS15305 (Dongsha4_15290) - 3559403..3563854 (-) 4452 WP_330203178.1 PAS domain S-box protein -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 38180.35 Da        Isoelectric Point: 4.7340

>NTDB_id=609529 Dongsha4_RS15300 WP_330203177.1 3557918..3558994(-) (recA) [Cyanobacterium sp. Dongsha4]
MATSTMAQNPDKEKALNLVLNQIERSFGKGSIMRLGDAAKMKVETISSGALTLDLALGGGFPKGRIIEIYGPESSGKTTL
ALHAIAEVQKAGGIAAFVDAEHALDPTYSAALGVDIDNLLVAQPDNGESALEIVDQLVRSSAVDIVVVDSVAALVPRAEI
EGEMGDLQVGLQARLMSKALRKVAGNIGKSGATVIFLNQLRQKIGISYGSPEVTTGGTALKFYASVRLDIRRIQTLKKGS
EGEYGIRAKVKVAKNKVAPPFRIAEFDIIFGSGISRVGCLLDLAEKTSIVNRKGAWYSYEGDNIAQGRDNAVKYLEENLE
IAEAIEQKVKAELEINNVSFGSSGDDSDSDNDNFDMDE

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=609529 Dongsha4_RS15300 WP_330203177.1 3557918..3558994(-) (recA) [Cyanobacterium sp. Dongsha4]
ATGGCTACAAGTACAATGGCTCAAAACCCCGATAAGGAAAAAGCATTAAACCTCGTCCTCAATCAGATTGAGCGTAGTTT
TGGCAAAGGCTCAATAATGCGTCTTGGAGATGCCGCAAAAATGAAGGTAGAAACTATCTCTAGCGGTGCTTTAACCTTGG
ATCTCGCCCTCGGTGGTGGTTTCCCTAAAGGTCGTATTATTGAAATCTATGGTCCTGAAAGTTCAGGTAAAACAACCCTC
GCCCTTCATGCGATCGCAGAAGTTCAAAAAGCTGGTGGCATCGCCGCCTTTGTAGATGCAGAACACGCATTAGATCCTAC
TTACTCTGCCGCTTTAGGAGTGGACATTGACAATTTACTTGTAGCTCAACCTGACAACGGTGAATCTGCCTTAGAAATTG
TCGATCAATTAGTACGTAGTTCTGCCGTAGATATTGTCGTAGTTGATTCCGTCGCCGCTCTTGTACCTCGTGCAGAAATA
GAAGGAGAAATGGGAGATTTACAAGTGGGCTTACAAGCTCGTTTGATGAGTAAGGCATTAAGAAAAGTTGCGGGAAATAT
TGGTAAATCCGGAGCAACAGTAATCTTTTTAAACCAACTACGTCAAAAAATCGGTATCAGCTATGGCAGTCCAGAAGTCA
CCACAGGAGGTACAGCTTTAAAATTTTATGCTTCTGTCCGTTTAGATATTCGTCGTATTCAAACCTTGAAAAAAGGTAGC
GAAGGGGAATACGGAATTCGGGCAAAAGTAAAAGTTGCGAAAAATAAAGTTGCCCCACCTTTTCGCATTGCTGAATTTGA
CATTATTTTCGGTTCTGGTATTTCTCGTGTTGGTTGTTTGTTAGACTTAGCGGAAAAAACTAGCATTGTTAACCGTAAAG
GGGCTTGGTACAGCTACGAAGGTGATAACATTGCTCAAGGTCGAGATAATGCCGTCAAATACTTAGAAGAAAATCTCGAA
ATTGCCGAAGCTATTGAACAAAAAGTCAAAGCTGAATTAGAGATTAATAATGTCAGTTTCGGGAGCTCAGGGGATGATTC
TGATTCTGACAATGATAATTTTGACATGGATGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(14-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

60.519

96.927

0.587
  recA Acinetobacter baylyi ADP1

60.35

95.81

0.578
  recA Pseudomonas stutzeri DSM 10701

61.585

91.62

0.564
  recA Glaesserella parasuis strain SC1401

58.601

95.81

0.561
  recA Helicobacter pylori 26695

61.468

91.341

0.561
  recA Helicobacter pylori strain NCTC11637

61.468

91.341

0.561
  recA Neisseria gonorrhoeae MS11

61.61

90.223

0.556
  recA Neisseria gonorrhoeae strain FA1090

61.61

90.223

0.556
  recA Neisseria gonorrhoeae MS11

61.61

90.223

0.556
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.529

94.972

0.556
  recA Latilactobacillus sakei subsp. sakei 23K

58.982

93.296

0.55
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

57.988

94.413

0.547
  recA Ralstonia pseudosolanacearum GMI1000

61.905

87.989

0.545
  recA Streptococcus mutans UA159

56.196

96.927

0.545
  recA Streptococcus pneumoniae D39

59.633

91.341

0.545
  recA Streptococcus pneumoniae Rx1

59.633

91.341

0.545
  recA Streptococcus pneumoniae R6

59.633

91.341

0.545
  recA Streptococcus pneumoniae TIGR4

59.633

91.341

0.545
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.185

90.503

0.545
  recA Vibrio cholerae strain A1552

60.185

90.503

0.545
  recA Bacillus subtilis subsp. subtilis str. 168

59.451

91.62

0.545
  recA Streptococcus mitis NCTC 12261

59.327

91.341

0.542
  recA Streptococcus mitis SK321

59.021

91.341

0.539
  recA Lactococcus lactis subsp. cremoris KW2

58.006

92.458

0.536
  recA Streptococcus pyogenes NZ131

57.798

91.341

0.528
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.573

91.62

0.5