Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LCN94_RS10200 Genome accession   NZ_CP084034
Coordinates   2067723..2068841 (+) Length   372 a.a.
NCBI ID   WP_178586275.1    Uniprot ID   -
Organism   Ruminococcus sp. FMB-CY1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2062723..2073841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCN94_RS10180 (LCN94_10195) - 2063518..2064219 (+) 702 WP_022235019.1 response regulator transcription factor -
  LCN94_RS10185 (LCN94_10200) - 2064256..2065728 (+) 1473 WP_252558868.1 HAMP domain-containing sensor histidine kinase -
  LCN94_RS10190 (LCN94_10205) - 2065745..2066734 (+) 990 WP_252558867.1 DUF1385 domain-containing protein -
  LCN94_RS10195 (LCN94_10210) prmC 2066750..2067601 (+) 852 WP_022235022.1 peptide chain release factor N(5)-glutamine methyltransferase -
  LCN94_RS10200 (LCN94_10215) recA 2067723..2068841 (+) 1119 WP_178586275.1 recombinase RecA Machinery gene
  LCN94_RS10205 (LCN94_10220) - 2068841..2069458 (+) 618 WP_252558866.1 regulatory protein RecX -
  LCN94_RS10210 (LCN94_10225) rimO 2069448..2070794 (+) 1347 WP_252558865.1 30S ribosomal protein S12 methylthiotransferase RimO -
  LCN94_RS10215 (LCN94_10230) pgsA 2070862..2071452 (+) 591 WP_252558864.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LCN94_RS10220 (LCN94_10235) epsC 2071482..2072132 (+) 651 WP_022235027.1 serine O-acetyltransferase EpsC -
  LCN94_RS10225 (LCN94_10240) cysS 2072145..2073542 (+) 1398 WP_252558863.1 cysteine--tRNA ligase -

Sequence

Protein


Download         Length: 372 a.a.        Molecular weight: 39754.51 Da        Isoelectric Point: 6.1880

>NTDB_id=609148 LCN94_RS10200 WP_178586275.1 2067723..2068841(+) (recA) [Ruminococcus sp. FMB-CY1]
MALDKEKALQTALTQIEKQFGKGAVMRLGENKHMNVDHISTGSLTLDIALGIGGLPRGRIVEIYGPESSGKTTLSLHCIA
EGQKNNGNVAFIDVEHALDPTYAAALGVDVDSLLVSQPDTGEDALEIAEALIRSGAIDVIVIDSVAALVPKAEIEGEMGD
SHVGLHARLMSQALRKLAGAINKSNCVAIFINQLREKVGVVYGNPEVTTGGRALKFYSSVRIDIRKQEVLKQNGEMIGAH
TKAKVVKNKLAPPFREAEFDIMYGKGISRTGELLDLAVKADVVQKAGAWFSYDGKRLGQGRDNVKELLENDKELSKEIED
KLMANIDKVVAASSPAKKGAKAKITEVANAKKPADAPAENANSANIDVLVDE

Nucleotide


Download         Length: 1119 bp        

>NTDB_id=609148 LCN94_RS10200 WP_178586275.1 2067723..2068841(+) (recA) [Ruminococcus sp. FMB-CY1]
ATGGCTTTAGATAAGGAAAAAGCGTTGCAAACTGCGCTTACTCAAATAGAAAAGCAATTCGGTAAAGGTGCAGTTATGCG
CCTTGGCGAAAATAAACATATGAATGTTGACCACATTTCAACAGGTTCTCTCACACTTGACATCGCACTCGGTATCGGCG
GTCTTCCACGAGGCAGAATCGTTGAAATTTACGGCCCGGAATCTTCGGGTAAAACCACGCTTTCACTCCACTGCATTGCA
GAGGGACAGAAAAACAACGGTAATGTTGCCTTTATAGATGTTGAGCACGCACTTGACCCTACCTATGCGGCTGCACTCGG
AGTAGATGTTGACTCCCTCCTCGTTTCACAGCCTGATACAGGTGAGGACGCACTTGAAATTGCCGAAGCACTTATCCGAA
GCGGCGCTATTGATGTAATAGTTATCGACTCGGTTGCCGCTCTTGTACCAAAGGCTGAAATCGAAGGTGAAATGGGCGAC
AGCCATGTAGGCTTACACGCAAGACTTATGTCACAGGCATTAAGAAAACTTGCGGGCGCAATCAACAAGAGCAACTGCGT
TGCTATCTTTATCAACCAGCTGCGTGAAAAAGTCGGCGTTGTTTACGGCAACCCGGAGGTTACCACGGGCGGCAGAGCGC
TTAAGTTCTACAGCTCGGTAAGAATAGATATTCGTAAGCAGGAAGTTCTTAAGCAAAACGGCGAAATGATAGGTGCACAC
ACAAAAGCAAAAGTCGTTAAGAACAAACTTGCACCGCCTTTCAGAGAGGCTGAGTTTGATATTATGTACGGCAAGGGTAT
TTCAAGAACAGGCGAATTGCTTGACCTTGCAGTAAAGGCAGATGTTGTTCAGAAAGCAGGCGCATGGTTCAGCTATGACG
GCAAGCGCCTCGGACAAGGCAGAGATAATGTAAAGGAACTTCTTGAAAACGACAAAGAACTTTCAAAAGAAATTGAAGAT
AAGCTTATGGCAAATATAGACAAAGTTGTTGCGGCAAGCTCTCCAGCCAAAAAGGGCGCAAAGGCAAAGATAACCGAAGT
TGCCAACGCTAAAAAGCCCGCCGACGCTCCTGCAGAAAATGCAAACAGCGCAAACATTGATGTGCTTGTTGACGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

68.354

84.946

0.581
  recA Helicobacter pylori 26695

65.741

87.097

0.573
  recA Helicobacter pylori strain NCTC11637

65.741

87.097

0.573
  recA Acinetobacter baumannii D1279779

66.771

85.753

0.573
  recA Glaesserella parasuis strain SC1401

63.473

89.785

0.57
  recA Bacillus subtilis subsp. subtilis str. 168

65.831

85.753

0.565
  recA Streptococcus mutans UA159

59.654

93.28

0.556
  recA Neisseria gonorrhoeae strain FA1090

63.385

87.366

0.554
  recA Neisseria gonorrhoeae MS11

63.385

87.366

0.554
  recA Neisseria gonorrhoeae MS11

63.385

87.366

0.554
  recA Pseudomonas stutzeri DSM 10701

63.19

87.634

0.554
  recA Streptococcus pneumoniae Rx1

57.222

96.774

0.554
  recA Streptococcus pneumoniae TIGR4

57.222

96.774

0.554
  recA Streptococcus pneumoniae R6

57.222

96.774

0.554
  recA Streptococcus pneumoniae D39

57.222

96.774

0.554
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.665

86.559

0.551
  recA Vibrio cholerae strain A1552

63.665

86.559

0.551
  recA Ralstonia pseudosolanacearum GMI1000

66.775

82.527

0.551
  recA Streptococcus pyogenes NZ131

63.158

86.828

0.548
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.924

84.946

0.543
  recA Latilactobacillus sakei subsp. sakei 23K

62.617

86.29

0.54
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.538

87.366

0.538
  recA Streptococcus mitis NCTC 12261

61.61

86.828

0.535
  recA Streptococcus mitis SK321

61.61

86.828

0.535
  recA Lactococcus lactis subsp. cremoris KW2

60.923

87.366

0.532
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.975

87.634

0.508