Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LCF41_RS16655 Genome accession   NZ_CP084032
Coordinates   3674675..3675748 (-) Length   357 a.a.
NCBI ID   WP_015841372.1    Uniprot ID   A0AAW3T262
Organism   Pectobacterium colocasium strain LJ1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 3676700..3677740 3674675..3675748 flank 952


Gene organization within MGE regions


Location: 3674675..3677740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCF41_RS16655 recA 3674675..3675748 (-) 1074 WP_015841372.1 recombinase RecA Machinery gene
  LCF41_RS16660 pncC 3675856..3676350 (-) 495 WP_225085527.1 nicotinamide-nucleotide amidase -
  LCF41_RS16665 - 3676700..3677740 (+) 1041 WP_225084894.1 IS630 family transposase -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38246.71 Da        Isoelectric Point: 5.0681

>NTDB_id=609097 LCF41_RS16655 WP_015841372.1 3674675..3675748(-) (recA) [Pectobacterium colocasium strain LJ1]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVG
SETRVKVVKNKVAAPFKQAEFQILYGEGINIHGELVDLGVKHKLIEKAGAWYSYNGDKIGQGKANACNFLKENPAVAAEL
DKKLREMLLHKGNELTPATAGNSHDEDAFADEGNEEF

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=609097 LCF41_RS16655 WP_015841372.1 3674675..3675748(-) (recA) [Pectobacterium colocasium strain LJ1]
ATGGCTATTGATGAGAACAAACAAAAGGCACTTGCGGCAGCACTGGGCCAAATCGAAAAGCAATTTGGTAAAGGTTCTAT
CATGCGGTTGGGCGAGGATCGCTCAATGGATGTTGAAACTATTTCTACAGGCTCCTTGTCCCTTGATATTGCTTTGGGTG
CCGGTGGTTTGCCGATGGGCCGTATCGTTGAGATTTATGGCCCGGAATCTTCCGGTAAAACAACGCTAACTTTACAGGTT
ATTGCTGCCGCTCAGCGTGAAGGTAAAACGTGTGCATTCATCGATGCTGAACATGCGTTGGATCCGATTTATGCGAAAAA
GCTTGGCGTAGATATCGATAATCTGCTGTGTTCTCAGCCGGATACTGGCGAACAAGCTCTGGAAATCTGTGATGCGCTAA
CGCGCTCTGGTGCTGTTGACGTTATCATCGTCGACTCTGTTGCGGCTCTGACGCCGAAAGCAGAAATTGAAGGTGAAATC
GGCGACTCCCACATGGGCCTGGCTGCTCGTATGATGAGTCAGGCGATGCGTAAACTGGCGGGTAACCTGAAACAAGCCAA
TACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATCGGTGTGATGTTCGGTAACCCTGAAACGACAACTGGTGGTA
ACGCTCTGAAGTTTTATGCTTCCGTTCGTCTGGATATTCGCCGTACTGGTGCTATCAAGGAAGGCGAAGAAGTCGTCGGC
AGCGAAACTCGCGTTAAAGTCGTGAAGAATAAAGTTGCGGCACCGTTCAAACAGGCTGAATTCCAGATTCTGTACGGCGA
AGGTATCAACATCCACGGCGAGCTGGTCGATCTGGGTGTGAAACACAAGCTGATCGAAAAAGCAGGTGCCTGGTATAGCT
ATAACGGCGACAAAATTGGTCAGGGTAAAGCGAATGCCTGTAATTTCCTGAAAGAGAACCCAGCGGTTGCTGCGGAACTG
GATAAGAAATTGCGTGAAATGCTGCTGCATAAAGGCAATGAGCTAACGCCTGCCACAGCTGGTAACAGCCATGACGAAGA
TGCATTCGCCGACGAAGGCAACGAAGAGTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

83.285

97.199

0.81
  recA Vibrio cholerae strain A1552

83.285

97.199

0.81
  recA Pseudomonas stutzeri DSM 10701

75.841

91.597

0.695
  recA Acinetobacter baylyi ADP1

70.64

96.359

0.681
  recA Glaesserella parasuis strain SC1401

68.555

98.88

0.678
  recA Acinetobacter baumannii D1279779

72.424

92.437

0.669
  recA Neisseria gonorrhoeae MS11

69.325

91.317

0.633
  recA Neisseria gonorrhoeae MS11

69.325

91.317

0.633
  recA Neisseria gonorrhoeae strain FA1090

69.325

91.317

0.633
  recA Ralstonia pseudosolanacearum GMI1000

70.418

87.115

0.613
  recA Streptococcus mitis SK321

60.282

99.44

0.599
  recA Streptococcus pneumoniae R6

59.718

99.44

0.594
  recA Streptococcus mitis NCTC 12261

59.718

99.44

0.594
  recA Streptococcus pneumoniae TIGR4

59.718

99.44

0.594
  recA Streptococcus pneumoniae Rx1

59.718

99.44

0.594
  recA Streptococcus pneumoniae D39

59.718

99.44

0.594
  recA Helicobacter pylori strain NCTC11637

62.614

92.157

0.577
  recA Helicobacter pylori 26695

62.31

92.157

0.574
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.299

93.838

0.566
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.774

91.597

0.566
  recA Lactococcus lactis subsp. cremoris KW2

62.539

90.476

0.566
  recA Streptococcus pyogenes NZ131

62.154

91.036

0.566
  recA Streptococcus mutans UA159

61.846

91.036

0.563
  recA Latilactobacillus sakei subsp. sakei 23K

61.538

91.036

0.56
  recA Bacillus subtilis subsp. subtilis str. 168

61.994

89.916

0.557
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.589

91.317

0.535