Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | LCH17_RS08510 | Genome accession | NZ_CP083944 |
| Coordinates | 1891271..1892335 (-) | Length | 354 a.a. |
| NCBI ID | WP_011707431.1 | Uniprot ID | A0AAX0XUN9 |
| Organism | Aeromonas hydrophila strain CSUSB2 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1853439..1908565 | 1891271..1892335 | within | 0 |
Gene organization within MGE regions
Location: 1853439..1908565
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LCH17_RS22835 | - | 1853439..1853792 (+) | 354 | Protein_1604 | type I restriction endonuclease | - |
| LCH17_RS08340 (LCH17_08340) | - | 1853895..1855985 (+) | 2091 | WP_396021490.1 | DEAD/DEAH box helicase family protein | - |
| LCH17_RS08345 (LCH17_08345) | - | 1856033..1857946 (+) | 1914 | WP_224481129.1 | N-6 DNA methylase | - |
| LCH17_RS08350 (LCH17_08350) | - | 1857949..1858665 (+) | 717 | WP_224481130.1 | hypothetical protein | - |
| LCH17_RS08355 (LCH17_08355) | - | 1858667..1859464 (+) | 798 | WP_224481131.1 | TIGR02391 family protein | - |
| LCH17_RS08360 (LCH17_08360) | - | 1860110..1860667 (-) | 558 | WP_224481132.1 | recombinase family protein | - |
| LCH17_RS08365 (LCH17_08365) | - | 1861057..1862883 (+) | 1827 | WP_224481133.1 | hypothetical protein | - |
| LCH17_RS22840 | - | 1863628..1863966 (-) | 339 | WP_396021491.1 | terminase | - |
| LCH17_RS08375 (LCH17_08375) | istA | 1864152..1865693 (+) | 1542 | WP_060434992.1 | IS21-like element ISAs29 family transposase | - |
| LCH17_RS08380 (LCH17_08380) | istB | 1865708..1866463 (+) | 756 | WP_000194037.1 | IS21-like element ISAs29 family helper ATPase IstB | - |
| LCH17_RS22845 | - | 1866501..1867043 (-) | 543 | WP_396021485.1 | hypothetical protein | - |
| LCH17_RS08385 (LCH17_08385) | - | 1867556..1869076 (-) | 1521 | WP_103244175.1 | helicase RepA family protein | - |
| LCH17_RS08390 (LCH17_08390) | - | 1869084..1869317 (-) | 234 | WP_024946432.1 | hypothetical protein | - |
| LCH17_RS08395 (LCH17_08395) | - | 1870054..1871097 (-) | 1044 | WP_224481135.1 | hypothetical protein | - |
| LCH17_RS08400 (LCH17_08400) | - | 1871094..1872119 (-) | 1026 | WP_224481136.1 | site-specific integrase | - |
| LCH17_RS08410 (LCH17_08410) | - | 1872462..1872983 (+) | 522 | WP_016352039.1 | RDD family protein | - |
| LCH17_RS08415 (LCH17_08415) | lptG | 1873154..1874224 (-) | 1071 | WP_011707420.1 | LPS export ABC transporter permease LptG | - |
| LCH17_RS08420 (LCH17_08420) | lptF | 1874366..1875478 (-) | 1113 | WP_005305138.1 | LPS export ABC transporter permease LptF | - |
| LCH17_RS08425 (LCH17_08425) | pepA | 1875651..1877159 (+) | 1509 | WP_039213675.1 | leucyl aminopeptidase | - |
| LCH17_RS08430 (LCH17_08430) | - | 1877322..1877777 (+) | 456 | WP_224481137.1 | DNA polymerase III subunit chi | - |
| LCH17_RS08435 (LCH17_08435) | - | 1877843..1880695 (+) | 2853 | WP_224481138.1 | valine--tRNA ligase | - |
| LCH17_RS08440 (LCH17_08440) | - | 1880882..1882174 (+) | 1293 | WP_029302168.1 | hemolysin family protein | - |
| LCH17_RS08445 (LCH17_08445) | - | 1882193..1882858 (+) | 666 | WP_016352045.1 | DedA family protein | - |
| LCH17_RS08450 (LCH17_08450) | pbpG | 1882997..1883824 (+) | 828 | WP_102987944.1 | D-alanyl-D-alanine endopeptidase | - |
| LCH17_RS08455 (LCH17_08455) | - | 1883873..1884835 (-) | 963 | WP_224481139.1 | IS1595 family transposase | - |
| LCH17_RS08490 (LCH17_08490) | csrA | 1886100..1886288 (-) | 189 | WP_005305164.1 | carbon storage regulator CsrA | - |
| LCH17_RS08495 (LCH17_08495) | - | 1886382..1887629 (-) | 1248 | WP_224481140.1 | aspartate kinase | - |
| LCH17_RS08500 (LCH17_08500) | alaS | 1887646..1890270 (-) | 2625 | WP_024945613.1 | alanine--tRNA ligase | - |
| LCH17_RS08505 (LCH17_08505) | - | 1890729..1891229 (-) | 501 | WP_029304798.1 | regulatory protein RecX | - |
| LCH17_RS08510 (LCH17_08510) | recA | 1891271..1892335 (-) | 1065 | WP_011707431.1 | recombinase RecA | Machinery gene |
| LCH17_RS08515 (LCH17_08515) | pncC | 1892415..1892906 (-) | 492 | WP_039214056.1 | nicotinamide-nucleotide amidase | - |
| LCH17_RS08520 (LCH17_08520) | mutS | 1893140..1895722 (+) | 2583 | WP_224481141.1 | DNA mismatch repair protein MutS | - |
| LCH17_RS08525 (LCH17_08525) | - | 1895816..1897414 (-) | 1599 | WP_011707434.1 | BCCT family transporter | - |
| LCH17_RS08530 (LCH17_08530) | - | 1897424..1897951 (-) | 528 | WP_011707435.1 | hypothetical protein | - |
| LCH17_RS08535 (LCH17_08535) | - | 1898115..1898594 (+) | 480 | WP_011707436.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| LCH17_RS08540 (LCH17_08540) | - | 1898642..1899223 (-) | 582 | WP_011707437.1 | YjaG family protein | - |
| LCH17_RS08545 (LCH17_08545) | - | 1899386..1900330 (+) | 945 | WP_224481142.1 | D-2-hydroxyacid dehydrogenase | - |
| LCH17_RS08550 (LCH17_08550) | mepM | 1900397..1901734 (-) | 1338 | WP_016352056.1 | murein DD-endopeptidase MepM | - |
| LCH17_RS08555 (LCH17_08555) | - | 1901995..1903287 (+) | 1293 | WP_041216491.1 | LapD/MoxY N-terminal periplasmic domain-containing protein | - |
| LCH17_RS08560 (LCH17_08560) | - | 1903287..1904228 (+) | 942 | WP_011707441.1 | TAXI family TRAP transporter solute-binding subunit | - |
| LCH17_RS08565 (LCH17_08565) | - | 1904223..1904897 (-) | 675 | WP_029304793.1 | transglutaminase-like cysteine peptidase | - |
| LCH17_RS08570 (LCH17_08570) | znuA | 1904983..1905897 (-) | 915 | WP_224481143.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| LCH17_RS08575 (LCH17_08575) | znuC | 1905992..1906756 (+) | 765 | WP_039214049.1 | zinc ABC transporter ATP-binding protein ZnuC | - |
| LCH17_RS08580 (LCH17_08580) | znuB | 1906778..1907557 (+) | 780 | WP_011707445.1 | zinc ABC transporter permease subunit ZnuB | - |
| LCH17_RS08585 (LCH17_08585) | - | 1907648..1908565 (-) | 918 | WP_011707446.1 | LysR substrate-binding domain-containing protein | - |
Sequence
Protein
Download Length: 354 a.a. Molecular weight: 37975.64 Da Isoelectric Point: 4.8912
>NTDB_id=608724 LCH17_RS08510 WP_011707431.1 1891271..1892335(-) (recA) [Aeromonas hydrophila strain CSUSB2]
MDQNKQKALAAALGQIEKQFGKGSIMRLGDSKTMDIEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIA
EAQKKGKTCAFVDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIEGEMGD
SHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGNE
TRVKVVKNKVAPPFKQAEFQIFYGAGISKEGELVDLGVKHKLIDKAGAWYSYNGEKIGQGKANVMKLFAENKAMAGEVEA
RLRELLLSGAVPVDDKAAPVEAEEFDAESEQEFE
MDQNKQKALAAALGQIEKQFGKGSIMRLGDSKTMDIEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIA
EAQKKGKTCAFVDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIEGEMGD
SHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGNE
TRVKVVKNKVAPPFKQAEFQIFYGAGISKEGELVDLGVKHKLIDKAGAWYSYNGEKIGQGKANVMKLFAENKAMAGEVEA
RLRELLLSGAVPVDDKAAPVEAEEFDAESEQEFE
Nucleotide
Download Length: 1065 bp
>NTDB_id=608724 LCH17_RS08510 WP_011707431.1 1891271..1892335(-) (recA) [Aeromonas hydrophila strain CSUSB2]
ATGGATCAGAACAAACAGAAGGCACTGGCGGCTGCGCTGGGTCAGATCGAAAAGCAGTTTGGCAAAGGCTCCATCATGCG
TCTGGGCGACAGCAAGACCATGGATATCGAAGCCATCTCCACCGGCTCCCTCTCCCTGGACGTGGCGCTGGGCATCGGTG
GCCTGCCGTGCGGTCGTATCGTCGAGATCTATGGCCCGGAATCTTCCGGTAAAACCACGCTGACCCTGCAGGTGATCGCC
GAAGCCCAGAAGAAGGGCAAGACCTGTGCCTTCGTCGATGCGGAGCACGCGCTGGATCCCATCTATGCCGCCAAGCTGGG
TGTCAACGTCGACGACCTGCTGATCTCCCAGCCGGATACCGGTGAACAGGCACTGGAAATCTGCGACATGCTGGTGCGCT
CCAACGCCGTTGACGTCATCATCGTCGACTCCGTGGCAGCCCTGACCCCGAAAGCGGAAATCGAAGGCGAGATGGGGGAT
TCCCACGTCGGTCTGCAGGCCCGTCTGATGTCCCAAGCGCTCCGTAAACTGACCGCCAACATCAAGAACGCCAACTGCCT
GTGCATCTTCATCAACCAGATCCGGATGAAGATCGGCGTCATGTTCGGCAGCCCGGAGACCACCACGGGTGGTAACGCGC
TCAAGTTCTACGCCTCCGTGCGTCTGGATATCCGTCGCATCGGCGCCATCAAGGAAGGTGACGAAGTGGTTGGTAACGAG
ACCCGCGTCAAAGTGGTCAAGAACAAGGTGGCCCCGCCCTTCAAACAGGCCGAGTTCCAGATTTTCTATGGCGCTGGCAT
CTCCAAAGAGGGCGAGCTGGTGGATCTGGGCGTCAAGCACAAGCTGATCGACAAGGCCGGTGCCTGGTACAGCTACAACG
GCGAGAAGATCGGTCAGGGCAAGGCCAACGTCATGAAGCTGTTCGCCGAGAACAAGGCGATGGCTGGTGAAGTGGAAGCC
CGTCTGCGCGAACTGCTGCTCTCCGGTGCCGTACCTGTCGATGACAAGGCTGCACCGGTTGAGGCAGAAGAGTTCGATGC
CGAAAGCGAACAAGAGTTCGAATAA
ATGGATCAGAACAAACAGAAGGCACTGGCGGCTGCGCTGGGTCAGATCGAAAAGCAGTTTGGCAAAGGCTCCATCATGCG
TCTGGGCGACAGCAAGACCATGGATATCGAAGCCATCTCCACCGGCTCCCTCTCCCTGGACGTGGCGCTGGGCATCGGTG
GCCTGCCGTGCGGTCGTATCGTCGAGATCTATGGCCCGGAATCTTCCGGTAAAACCACGCTGACCCTGCAGGTGATCGCC
GAAGCCCAGAAGAAGGGCAAGACCTGTGCCTTCGTCGATGCGGAGCACGCGCTGGATCCCATCTATGCCGCCAAGCTGGG
TGTCAACGTCGACGACCTGCTGATCTCCCAGCCGGATACCGGTGAACAGGCACTGGAAATCTGCGACATGCTGGTGCGCT
CCAACGCCGTTGACGTCATCATCGTCGACTCCGTGGCAGCCCTGACCCCGAAAGCGGAAATCGAAGGCGAGATGGGGGAT
TCCCACGTCGGTCTGCAGGCCCGTCTGATGTCCCAAGCGCTCCGTAAACTGACCGCCAACATCAAGAACGCCAACTGCCT
GTGCATCTTCATCAACCAGATCCGGATGAAGATCGGCGTCATGTTCGGCAGCCCGGAGACCACCACGGGTGGTAACGCGC
TCAAGTTCTACGCCTCCGTGCGTCTGGATATCCGTCGCATCGGCGCCATCAAGGAAGGTGACGAAGTGGTTGGTAACGAG
ACCCGCGTCAAAGTGGTCAAGAACAAGGTGGCCCCGCCCTTCAAACAGGCCGAGTTCCAGATTTTCTATGGCGCTGGCAT
CTCCAAAGAGGGCGAGCTGGTGGATCTGGGCGTCAAGCACAAGCTGATCGACAAGGCCGGTGCCTGGTACAGCTACAACG
GCGAGAAGATCGGTCAGGGCAAGGCCAACGTCATGAAGCTGTTCGCCGAGAACAAGGCGATGGCTGGTGAAGTGGAAGCC
CGTCTGCGCGAACTGCTGCTCTCCGGTGCCGTACCTGTCGATGACAAGGCTGCACCGGTTGAGGCAGAAGAGTTCGATGC
CGAAAGCGAACAAGAGTTCGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.