Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LCD50_RS16915 Genome accession   NZ_CP083857
Coordinates   3560082..3561140 (-) Length   352 a.a.
NCBI ID   WP_014884978.1    Uniprot ID   -
Organism   Enterobacter kobei strain 12379-yvys     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3555082..3566140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCD50_RS16900 (LCD50_16930) csrA 3556327..3556512 (-) 186 WP_000906486.1 carbon storage regulator CsrA -
  LCD50_RS16905 (LCD50_16935) alaS 3556754..3559381 (-) 2628 WP_247170607.1 alanine--tRNA ligase -
  LCD50_RS16910 (LCD50_16940) recX 3559513..3560013 (-) 501 WP_014884977.1 recombination regulator RecX -
  LCD50_RS16915 (LCD50_16945) recA 3560082..3561140 (-) 1059 WP_014884978.1 recombinase RecA Machinery gene
  LCD50_RS16920 (LCD50_16950) pncC 3561230..3561727 (-) 498 WP_023331148.1 nicotinamide-nucleotide amidase -
  LCD50_RS16925 (LCD50_16955) - 3561857..3562735 (-) 879 WP_213783031.1 metal ABC transporter substrate-binding protein -
  LCD50_RS16930 (LCD50_16960) - 3562750..3563610 (-) 861 WP_014884981.1 metal ABC transporter permease -
  LCD50_RS16935 (LCD50_16965) - 3563607..3564260 (-) 654 WP_045134078.1 metal ABC transporter ATP-binding protein -
  LCD50_RS16940 (LCD50_16970) mltB 3564526..3565626 (-) 1101 WP_023331153.1 lytic murein transglycosylase B -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37853.31 Da        Isoelectric Point: 4.8134

>NTDB_id=608278 LCD50_RS16915 WP_014884978.1 3560082..3561140(-) (recA) [Enterobacter kobei strain 12379-yvys]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRTMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFFGELVDLGVKEKLIEKAGAWYSYNGDKIGQGKANAISWLKENPAAAKEI
EKKVRELLLSNQDSKPDFVVDAADAEETNEDF

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=608278 LCD50_RS16915 WP_014884978.1 3560082..3561140(-) (recA) [Enterobacter kobei strain 12379-yvys]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATCGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTACCATGGATGTTGAAACGATCTCCACCGGTTCGCTTTCTCTGGACATCGCGCTGGGCG
CGGGCGGTCTGCCAATGGGCCGTATCGTAGAGATCTACGGGCCAGAGTCCTCCGGTAAAACCACCCTGACGCTGCAGGTG
ATTGCTGCGGCACAGCGCGAAGGTAAAACCTGTGCGTTTATCGATGCCGAGCACGCGCTGGATCCTGTTTATGCGCGTAA
ACTGGGCGTGGACATCGACAACCTGCTGTGTTCTCAGCCGGACACCGGTGAGCAGGCGCTGGAAATTTGTGACGCGCTGG
CGCGCTCTGGTGCTGTTGACGTTATCGTGGTCGACTCCGTTGCTGCACTGACGCCAAAAGCGGAAATCGAAGGTGAAATC
GGCGACTCTCACATGGGCCTCGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCAGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGTGTGATGTTCGGTAACCCGGAAACCACAACCGGTGGTA
ACGCACTGAAATTCTACGCCTCTGTCCGTCTGGATATCCGCCGTATCGGCGCGGTGAAAGAGGGTGAAAACGTTGTTGGT
AGCGAAACGCGCGTGAAGGTTGTGAAGAACAAAATCGCCGCACCGTTCAAACAGGCTGAATTCCAGATCCTCTACGGCGA
AGGGATTAACTTCTTCGGTGAGCTGGTTGACCTGGGCGTGAAAGAGAAGCTGATTGAAAAAGCGGGCGCCTGGTATAGCT
ATAACGGTGACAAAATTGGTCAGGGTAAAGCGAATGCGATTTCCTGGCTGAAAGAGAACCCGGCTGCGGCGAAAGAGATT
GAGAAGAAGGTGCGTGAGCTTCTGCTGAGCAACCAGGACTCTAAACCTGATTTCGTGGTGGATGCTGCGGATGCTGAAGA
AACCAACGAAGACTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

84.894

94.034

0.798
  recA Vibrio cholerae O1 biovar El Tor strain E7946

84.894

94.034

0.798
  recA Pseudomonas stutzeri DSM 10701

72.832

98.295

0.716
  recA Acinetobacter baumannii D1279779

70.774

99.148

0.702
  recA Acinetobacter baylyi ADP1

74.39

93.182

0.693
  recA Glaesserella parasuis strain SC1401

69.364

98.295

0.682
  recA Neisseria gonorrhoeae MS11

69.632

92.614

0.645
  recA Neisseria gonorrhoeae MS11

69.632

92.614

0.645
  recA Neisseria gonorrhoeae strain FA1090

69.632

92.614

0.645
  recA Ralstonia pseudosolanacearum GMI1000

70.74

88.352

0.625
  recA Helicobacter pylori strain NCTC11637

62.018

95.739

0.594
  recA Helicobacter pylori 26695

61.721

95.739

0.591
  recA Streptococcus pneumoniae TIGR4

62.848

91.761

0.577
  recA Streptococcus pneumoniae Rx1

62.848

91.761

0.577
  recA Streptococcus pneumoniae D39

62.848

91.761

0.577
  recA Streptococcus pneumoniae R6

62.848

91.761

0.577
  recA Bacillus subtilis subsp. subtilis str. 168

62.617

91.193

0.571
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.037

92.045

0.571
  recA Streptococcus mitis NCTC 12261

62.229

91.761

0.571
  recA Streptococcus mitis SK321

62.229

91.761

0.571
  recA Streptococcus pyogenes NZ131

61.846

92.33

0.571
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.36

94.602

0.571
  recA Lactococcus lactis subsp. cremoris KW2

61.92

91.761

0.568
  recA Streptococcus mutans UA159

61.538

92.33

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

60.923

92.33

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.059

91.193

0.557