Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LAU39_RS05120 Genome accession   NZ_CP083602
Coordinates   986949..988007 (+) Length   352 a.a.
NCBI ID   WP_224188246.1    Uniprot ID   -
Organism   Macrococcus armenti strain JEK29     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 981949..993007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAU39_RS05095 (LAU39_05095) yfmH 982462..983730 (+) 1269 WP_224188242.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  LAU39_RS05100 (LAU39_05100) - 983723..984430 (+) 708 WP_224188243.1 SDR family NAD(P)-dependent oxidoreductase -
  LAU39_RS05105 (LAU39_05105) - 984440..985234 (+) 795 WP_224188244.1 YmfK family protein -
  LAU39_RS05110 (LAU39_05110) - 985247..986077 (+) 831 WP_224188245.1 helix-turn-helix domain-containing protein -
  LAU39_RS05115 (LAU39_05115) pgsA 986094..986675 (+) 582 WP_224186151.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LAU39_RS05120 (LAU39_05120) recA 986949..988007 (+) 1059 WP_224188246.1 recombinase RecA Machinery gene
  LAU39_RS05125 (LAU39_05125) rny 988226..989785 (+) 1560 WP_224188247.1 ribonuclease Y -
  LAU39_RS05130 (LAU39_05130) - 989818..990000 (-) 183 WP_224188248.1 hypothetical protein -
  LAU39_RS05135 (LAU39_05135) - 990095..990883 (+) 789 WP_224188249.1 TIGR00282 family metallophosphoesterase -
  LAU39_RS05140 (LAU39_05140) - 990896..991390 (+) 495 WP_224188250.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38116.20 Da        Isoelectric Point: 5.0032

>NTDB_id=606520 LAU39_RS05120 WP_224188246.1 986949..988007(+) (recA) [Macrococcus armenti strain JEK29]
MSERQKALDTVIKNMEKSFGKGAVMKLGDSTDRNVSTVSSGSITLDSALGVGGYPKGRIIEIYGPESSGKTTVALHAIAE
VQRQGGVAAFIDAEHALDPVYAKNLGVDIENLYLSQPDHGEQGLEIAEAFVRSGAIDIIVVDSVAALTPKAEIEGEMGDS
HMGLQARLMSQALRKLSGSVSKSNTIAIFINQVREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNRT
KIKVVKNKVAPPFKVAEVDIMYGKGISREGEIVDLGAEYEVLQKAGAWYSYDGERIGQGRENIKTFLKENPEVRDEIDQK
IRKAMGVGASLEQTESPKDVVGEDDLFDGELE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=606520 LAU39_RS05120 WP_224188246.1 986949..988007(+) (recA) [Macrococcus armenti strain JEK29]
ATGAGCGAAAGACAGAAGGCTTTAGATACAGTTATTAAAAATATGGAGAAATCATTCGGTAAAGGTGCTGTAATGAAATT
AGGAGATAGTACAGACCGTAATGTTTCTACTGTTTCAAGTGGCTCTATTACTTTAGATAGTGCACTTGGTGTAGGTGGTT
ATCCAAAAGGACGTATTATCGAAATATATGGTCCTGAAAGTTCAGGTAAAACGACTGTTGCTTTACATGCGATTGCAGAA
GTTCAGCGTCAAGGTGGGGTTGCAGCATTTATTGATGCAGAACATGCATTGGATCCGGTATACGCTAAAAATTTAGGTGT
AGATATTGAAAATTTATATTTATCTCAACCAGACCATGGTGAGCAAGGTTTAGAAATTGCAGAAGCATTCGTGCGCAGTG
GTGCAATTGATATTATTGTTGTCGATTCAGTTGCAGCATTAACACCGAAAGCAGAAATTGAAGGTGAAATGGGAGACTCG
CATATGGGGCTTCAGGCGCGATTAATGTCTCAAGCTTTGCGTAAACTTTCAGGTTCAGTTTCTAAGTCGAATACGATTGC
AATTTTCATCAACCAAGTTCGTGAGAAAATTGGTGTAATGTTCGGTAATCCTGAAACGACACCTGGTGGCCGTGCACTTA
AATTCTACTCTTCAGTACGTTTAGAAGTACGTCGTGCAGAACAGTTAAAACAAGGGCAGGATATTGTCGGAAATAGAACG
AAAATTAAAGTTGTAAAAAATAAAGTTGCACCACCATTTAAAGTTGCTGAAGTTGATATTATGTACGGTAAAGGGATTTC
AAGAGAAGGCGAAATCGTTGATTTAGGTGCAGAATATGAAGTACTTCAAAAAGCAGGTGCATGGTATTCATATGACGGAG
AACGTATCGGTCAAGGTCGTGAGAACATTAAAACATTCTTAAAAGAGAACCCTGAAGTGAGAGATGAAATCGATCAGAAA
ATCCGAAAAGCGATGGGTGTTGGTGCATCTCTTGAGCAGACAGAGTCACCAAAAGATGTTGTTGGAGAAGATGATTTGTT
TGATGGAGAATTAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.453

92.898

0.71
  recA Latilactobacillus sakei subsp. sakei 23K

71.385

92.33

0.659
  recA Streptococcus mitis SK321

62.994

100

0.634
  recA Streptococcus mitis NCTC 12261

62.712

100

0.631
  recA Streptococcus pyogenes NZ131

67.683

93.182

0.631
  recA Streptococcus mutans UA159

67.477

93.466

0.631
  recA Streptococcus pneumoniae TIGR4

63.584

98.295

0.625
  recA Streptococcus pneumoniae Rx1

63.584

98.295

0.625
  recA Streptococcus pneumoniae D39

63.584

98.295

0.625
  recA Streptococcus pneumoniae R6

63.584

98.295

0.625
  recA Acinetobacter baylyi ADP1

63.188

98.011

0.619
  recA Acinetobacter baumannii D1279779

65.528

91.477

0.599
  recA Neisseria gonorrhoeae strain FA1090

62.426

96.023

0.599
  recA Neisseria gonorrhoeae MS11

62.426

96.023

0.599
  recA Neisseria gonorrhoeae MS11

62.426

96.023

0.599
  recA Lactococcus lactis subsp. cremoris KW2

63.939

93.75

0.599
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64

92.33

0.591
  recA Ralstonia pseudosolanacearum GMI1000

65.176

88.92

0.58
  recA Vibrio cholerae strain A1552

63.354

91.477

0.58
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.354

91.477

0.58
  recA Helicobacter pylori strain NCTC11637

62.769

92.33

0.58
  recA Helicobacter pylori 26695

62.769

92.33

0.58
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.515

93.75

0.577
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.468

92.898

0.571
  recA Pseudomonas stutzeri DSM 10701

58.48

97.159

0.568
  recA Glaesserella parasuis strain SC1401

60.991

91.761

0.56