Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LAU43_RS05120 Genome accession   NZ_CP083595
Coordinates   990634..991692 (+) Length   352 a.a.
NCBI ID   WP_224184602.1    Uniprot ID   -
Organism   Macrococcus armenti strain 17Msa1131     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 985634..996692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAU43_RS05095 (LAU43_05095) yfmH 986147..987415 (+) 1269 WP_224186148.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  LAU43_RS05100 (LAU43_05100) - 987408..988115 (+) 708 WP_224186149.1 SDR family NAD(P)-dependent oxidoreductase -
  LAU43_RS05105 (LAU43_05105) - 988125..988919 (+) 795 WP_224184599.1 YmfK family protein -
  LAU43_RS05110 (LAU43_05110) - 988932..989762 (+) 831 WP_224186150.1 helix-turn-helix domain-containing protein -
  LAU43_RS05115 (LAU43_05115) pgsA 989779..990360 (+) 582 WP_224186151.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LAU43_RS05120 (LAU43_05120) recA 990634..991692 (+) 1059 WP_224184602.1 recombinase RecA Machinery gene
  LAU43_RS05125 (LAU43_05125) rny 991911..993470 (+) 1560 WP_224184603.1 ribonuclease Y -
  LAU43_RS05130 (LAU43_05130) - 993502..993684 (-) 183 WP_224184604.1 hypothetical protein -
  LAU43_RS05135 (LAU43_05135) - 993779..994567 (+) 789 WP_224186152.1 TIGR00282 family metallophosphoesterase -
  LAU43_RS05140 (LAU43_05140) - 994580..995074 (+) 495 WP_224186153.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38126.24 Da        Isoelectric Point: 5.0032

>NTDB_id=606465 LAU43_RS05120 WP_224184602.1 990634..991692(+) (recA) [Macrococcus armenti strain 17Msa1131]
MSERQKALDTVIKNMEKSFGKGAVMKLGDSTDRNVSTVSSGSITLDSALGVGGYPKGRIIEIYGPESSGKTTVALHAIAE
VQRQGGVAAFIDAEHALDPVYAKNLGVDIENLYLSQPDHGEQGLEIAEAFVRSGAIDIIVVDSVAALTPKAEIEGEMGDS
HMGLQARLMSQALRKLSGSVSKSNTIAIFINQVREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNRT
KIKVVKNKVAPPFKVAEVDIMYGKGISREGEIVDLGAEYEVLQKAGAWYSYDGERIGQGRENIKTFLKENPEVRDEIDQK
IRKAMGVGASLEQPETPKDVVGEDDLFDGELE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=606465 LAU43_RS05120 WP_224184602.1 990634..991692(+) (recA) [Macrococcus armenti strain 17Msa1131]
ATGAGCGAAAGACAGAAGGCTTTAGATACAGTTATTAAAAATATGGAGAAATCATTCGGTAAAGGTGCTGTAATGAAATT
AGGAGATAGTACAGACCGTAATGTTTCTACTGTTTCAAGTGGCTCTATTACTTTAGATAGTGCACTTGGTGTAGGTGGAT
ATCCAAAAGGACGTATCATCGAAATATATGGTCCTGAAAGTTCAGGGAAAACGACAGTTGCTTTACATGCGATTGCTGAA
GTTCAGCGTCAAGGTGGGGTTGCAGCATTTATTGATGCAGAACATGCATTGGATCCGGTATACGCTAAAAATTTAGGTGT
AGATATTGAGAATTTATATTTATCTCAACCAGACCACGGTGAGCAAGGTTTAGAAATCGCTGAAGCATTCGTGCGCAGTG
GTGCAATTGATATTATTGTTGTCGATTCAGTTGCAGCATTAACACCGAAAGCAGAAATTGAAGGTGAAATGGGAGACTCG
CATATGGGGCTTCAGGCGCGATTAATGTCTCAAGCTTTGCGTAAACTTTCAGGCTCAGTTTCTAAATCGAATACAATTGC
AATTTTCATCAACCAAGTTCGTGAAAAAATTGGTGTTATGTTCGGTAATCCTGAAACGACACCTGGTGGTCGTGCACTTA
AGTTCTACTCTTCAGTACGTTTAGAAGTACGTCGTGCAGAACAGTTAAAACAAGGGCAGGATATTGTCGGAAATAGAACG
AAAATTAAAGTTGTAAAAAATAAAGTTGCACCACCATTTAAAGTTGCTGAAGTCGATATTATGTACGGTAAAGGGATTTC
AAGAGAAGGTGAAATCGTTGATTTAGGTGCAGAGTATGAAGTACTTCAAAAAGCAGGTGCATGGTATTCATATGACGGAG
AACGCATCGGTCAAGGTCGTGAGAACATTAAGACATTCTTAAAAGAAAATCCAGAAGTGAGAGATGAAATCGATCAGAAA
ATCCGAAAAGCGATGGGTGTCGGTGCATCACTTGAGCAGCCAGAGACTCCAAAAGATGTCGTTGGAGAAGATGATTTGTT
TGATGGGGAATTAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.453

92.898

0.71
  recA Latilactobacillus sakei subsp. sakei 23K

71.385

92.33

0.659
  recA Streptococcus mitis SK321

62.712

100

0.631
  recA Streptococcus pyogenes NZ131

67.683

93.182

0.631
  recA Streptococcus mutans UA159

67.477

93.466

0.631
  recA Streptococcus mitis NCTC 12261

62.429

100

0.628
  recA Acinetobacter baylyi ADP1

62.899

98.011

0.616
  recA Streptococcus pneumoniae TIGR4

65.152

93.75

0.611
  recA Streptococcus pneumoniae Rx1

65.152

93.75

0.611
  recA Streptococcus pneumoniae D39

65.152

93.75

0.611
  recA Streptococcus pneumoniae R6

65.152

93.75

0.611
  recA Acinetobacter baumannii D1279779

65.528

91.477

0.599
  recA Lactococcus lactis subsp. cremoris KW2

63.939

93.75

0.599
  recA Neisseria gonorrhoeae strain FA1090

63.804

92.614

0.591
  recA Neisseria gonorrhoeae MS11

63.804

92.614

0.591
  recA Neisseria gonorrhoeae MS11

63.804

92.614

0.591
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64

92.33

0.591
  recA Ralstonia pseudosolanacearum GMI1000

65.176

88.92

0.58
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.354

91.477

0.58
  recA Vibrio cholerae strain A1552

63.354

91.477

0.58
  recA Helicobacter pylori 26695

62.769

92.33

0.58
  recA Helicobacter pylori strain NCTC11637

62.769

92.33

0.58
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.515

93.75

0.577
  recA Pseudomonas stutzeri DSM 10701

59.238

96.875

0.574
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.468

92.898

0.571
  recA Glaesserella parasuis strain SC1401

58.43

97.727

0.571