Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   N134_RS02705 Genome accession   NC_021872
Coordinates   620195..621283 (+) Length   362 a.a.
NCBI ID   WP_003667620.1    Uniprot ID   S5N4I2
Organism   Limosilactobacillus reuteri TD1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 615195..626283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N134_RS02685 (N134_02725) yfmH 615684..616982 (+) 1299 WP_020842949.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  N134_RS02690 (N134_02730) - 617081..618118 (+) 1038 WP_019252988.1 RodZ domain-containing protein -
  N134_RS02695 (N134_02735) pgsA 618146..618733 (+) 588 WP_003666663.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  N134_RS02700 (N134_02740) - 618858..620105 (+) 1248 WP_020842950.1 competence/damage-inducible protein A -
  N134_RS02705 (N134_02745) recA 620195..621283 (+) 1089 WP_003667620.1 recombinase RecA Machinery gene
  N134_RS02710 (N134_02750) rny 621519..623060 (+) 1542 WP_011953420.1 ribonuclease Y -
  N134_RS02715 (N134_02755) mutS 623222..625867 (+) 2646 WP_020842951.1 DNA mismatch repair protein MutS -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 39063.34 Da        Isoelectric Point: 5.1230

>NTDB_id=60623 N134_RS02705 WP_003667620.1 620195..621283(+) (recA) [Limosilactobacillus reuteri TD1]
MADQRKAALDVAIRKIEKNFGKGSIMRMGDATDMKVASVSSGSLAIDKALGIGGYPRGRIVEIYGPESSGKTTVALHAVA
EVQRQGGTAAYIDAENALDPQYAEALGVNIDDLLLSQPDSGEEGLEIADALISSGAVDLVIVDSVAALVPRAEIDGDMGD
THVGLQARLMSQALRKLSGEINKTKTIAIFINQIREKVGVMFGNPETTTGGRALKFYSTIRMEIRRAEQIKNGTDVIGNK
AKVKIVKNKVAPPFKRCEVDIMYGEGISKTGELLDMAVENDLVDKSGAWYSYGSERIGQGRENAKKWLKEHPDSMNELMD
KVRVANGMEPLNEKSTKETADDKASGKTGENKQETIEEASKE

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=60623 N134_RS02705 WP_003667620.1 620195..621283(+) (recA) [Limosilactobacillus reuteri TD1]
TTGGCTGACCAACGAAAAGCAGCATTAGATGTTGCTATCAGAAAGATCGAAAAGAACTTCGGTAAGGGTTCTATTATGCG
AATGGGTGATGCCACTGATATGAAGGTCGCTTCAGTTTCTAGTGGTTCCCTTGCTATTGACAAGGCACTTGGAATTGGTG
GATATCCTCGTGGCCGGATAGTTGAAATTTATGGTCCTGAAAGTTCTGGTAAGACTACTGTAGCATTACATGCAGTAGCA
GAAGTACAACGTCAAGGCGGAACAGCGGCCTATATTGATGCTGAAAATGCTCTTGATCCTCAATATGCAGAAGCCTTGGG
TGTTAATATTGATGACCTATTGCTTTCACAACCTGATAGTGGTGAAGAAGGATTAGAAATTGCTGATGCATTGATTTCAA
GTGGAGCAGTTGACTTAGTAATTGTTGATTCGGTTGCAGCATTAGTTCCTCGTGCTGAAATTGATGGTGATATGGGTGAT
ACCCATGTTGGATTACAAGCTCGTTTGATGTCTCAGGCTCTTCGGAAGCTTTCCGGTGAAATTAATAAGACAAAGACAAT
TGCTATCTTTATTAACCAAATCCGTGAAAAAGTTGGAGTGATGTTTGGTAACCCTGAAACAACAACTGGTGGACGGGCAC
TTAAATTTTACTCAACTATCCGGATGGAAATTCGTCGTGCGGAACAAATTAAGAATGGTACGGATGTTATTGGAAATAAA
GCTAAAGTAAAGATTGTTAAAAATAAGGTTGCTCCGCCATTCAAACGTTGTGAAGTTGACATTATGTATGGTGAGGGAAT
CTCTAAGACTGGTGAATTGCTAGATATGGCAGTTGAAAACGATCTTGTTGACAAGAGCGGTGCCTGGTACTCATATGGTA
GCGAACGTATTGGGCAAGGTCGTGAAAATGCTAAAAAGTGGCTTAAGGAACATCCAGACAGCATGAATGAATTAATGGAT
AAAGTTCGTGTTGCAAATGGGATGGAACCGTTAAATGAAAAGTCAACGAAAGAAACTGCTGATGATAAAGCCAGTGGTAA
GACCGGTGAAAATAAACAAGAAACAATTGAAGAAGCAAGTAAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S5N4I2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

77.419

94.199

0.729
  recA Bacillus subtilis subsp. subtilis str. 168

72.644

90.884

0.66
  recA Streptococcus mutans UA159

64.384

100

0.649
  recA Streptococcus pneumoniae R6

65.826

98.619

0.649
  recA Streptococcus pneumoniae TIGR4

65.826

98.619

0.649
  recA Streptococcus pneumoniae Rx1

65.826

98.619

0.649
  recA Streptococcus pneumoniae D39

65.826

98.619

0.649
  recA Streptococcus mitis NCTC 12261

64.804

98.895

0.641
  recA Streptococcus mitis SK321

68.997

90.884

0.627
  recA Streptococcus pyogenes NZ131

68.58

91.436

0.627
  recA Lactococcus lactis subsp. cremoris KW2

68.085

90.884

0.619
  recA Glaesserella parasuis strain SC1401

58.056

99.448

0.577
  recA Neisseria gonorrhoeae strain FA1090

59.649

94.475

0.564
  recA Neisseria gonorrhoeae MS11

59.649

94.475

0.564
  recA Neisseria gonorrhoeae MS11

59.649

94.475

0.564
  recA Vibrio cholerae strain A1552

57.224

97.514

0.558
  recA Vibrio cholerae O1 biovar El Tor strain E7946

57.224

97.514

0.558
  recA Ralstonia pseudosolanacearum GMI1000

61.468

90.331

0.555
  recA Pseudomonas stutzeri DSM 10701

58.065

94.199

0.547
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.55

90.331

0.547
  recA Acinetobacter baylyi ADP1

57.941

93.923

0.544
  recA Helicobacter pylori 26695

57.185

94.199

0.539
  recA Helicobacter pylori strain NCTC11637

56.891

94.199

0.536
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.879

91.16

0.528
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.462

89.779

0.525
  recA Acinetobacter baumannii D1279779

58.514

89.227

0.522

Multiple sequence alignment