Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LAG74_RS19155 Genome accession   NZ_CP083461
Coordinates   4182833..4183897 (-) Length   354 a.a.
NCBI ID   WP_005348744.1    Uniprot ID   A0A0K0MIY5
Organism   Aeromonas veronii strain SW3814     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4177833..4188897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAG74_RS19140 (LAG74_19170) - 4178104..4179342 (-) 1239 WP_224968929.1 aspartate kinase -
  LAG74_RS19145 (LAG74_19175) alaS 4179359..4181983 (-) 2625 WP_005343004.1 alanine--tRNA ligase -
  LAG74_RS19150 (LAG74_19180) - 4182279..4182788 (-) 510 WP_043822097.1 regulatory protein RecX -
  LAG74_RS19155 (LAG74_19185) recA 4182833..4183897 (-) 1065 WP_005348744.1 recombinase RecA Machinery gene
  LAG74_RS19160 (LAG74_19190) pncC 4183978..4184469 (-) 492 WP_224968931.1 nicotinamide-nucleotide amidase -
  LAG74_RS19165 (LAG74_19195) mutS 4184792..4187311 (+) 2520 WP_224970233.1 DNA mismatch repair protein MutS -
  LAG74_RS19170 (LAG74_19200) - 4187388..4188251 (-) 864 WP_224968933.1 patatin family protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37989.67 Da        Isoelectric Point: 4.8874

>NTDB_id=606025 LAG74_RS19155 WP_005348744.1 4182833..4183897(-) (recA) [Aeromonas veronii strain SW3814]
MDQNKQKALAAALGQIEKQFGKGSIMRLGDSKTMDIEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIA
EAQKKGKTCAFVDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIEGEMGD
SHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGNE
TRVKVVKNKVAPPFKQAEFQIFYGAGISKEGELVDLGVKHKLIDKAGAWYSYNGEKIGQGKANVMKLFAENKVMAGEVEA
RLRELLLSGAVPVDDKAAPVEADEFDAESEQEFE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=606025 LAG74_RS19155 WP_005348744.1 4182833..4183897(-) (recA) [Aeromonas veronii strain SW3814]
ATGGATCAGAACAAACAGAAGGCACTGGCGGCTGCGCTGGGTCAGATTGAAAAGCAGTTCGGCAAAGGTTCCATCATGCG
TCTGGGCGACAGCAAGACCATGGATATCGAAGCCATCTCTACCGGTTCCCTCTCGCTGGACGTGGCGCTGGGGATCGGCG
GTCTGCCGTGTGGCCGTATCGTCGAAATCTACGGCCCGGAATCTTCCGGTAAAACCACCCTCACCCTGCAGGTGATCGCG
GAAGCCCAGAAGAAGGGCAAAACCTGTGCCTTCGTCGATGCGGAACATGCCCTCGACCCTATCTACGCTGCCAAGCTGGG
CGTCAACGTCGACGACCTGCTGATCTCCCAGCCGGATACCGGTGAACAGGCGCTAGAGATCTGCGACATGCTGGTTCGCT
CCAACGCGGTTGACGTTATCATCGTCGACTCCGTGGCAGCCCTGACCCCGAAAGCGGAAATCGAAGGGGAGATGGGTGAC
TCCCACGTTGGTCTGCAGGCTCGTCTGATGTCCCAGGCGCTGCGCAAGCTGACCGCCAACATCAAGAACGCCAACTGCCT
GTGCATCTTCATCAACCAGATCCGGATGAAGATCGGCGTCATGTTCGGTAGCCCGGAGACCACTACCGGTGGTAACGCGC
TCAAGTTCTACGCTTCCGTGCGTCTGGATATCCGTCGTATCGGCGCCATCAAGGAAGGCGACGAAGTGGTCGGTAACGAG
ACTCGCGTCAAAGTGGTCAAGAACAAAGTTGCCCCGCCCTTCAAGCAGGCTGAATTCCAGATCTTCTACGGTGCCGGTAT
CTCCAAAGAGGGCGAGCTGGTGGATCTCGGCGTCAAGCACAAGCTGATCGACAAGGCCGGTGCCTGGTACAGCTACAACG
GCGAGAAGATCGGTCAGGGCAAGGCCAACGTGATGAAGCTGTTCGCCGAGAACAAGGTGATGGCTGGTGAAGTGGAAGCC
CGTCTGCGCGAGCTGCTGCTCTCCGGTGCCGTGCCAGTCGATGACAAGGCTGCACCGGTTGAGGCAGACGAGTTCGATGC
CGAAAGCGAACAAGAGTTCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K0MIY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

77.011

98.305

0.757
  recA Vibrio cholerae strain A1552

78.659

92.655

0.729
  recA Vibrio cholerae O1 biovar El Tor strain E7946

78.659

92.655

0.729
  recA Acinetobacter baumannii D1279779

72.886

96.893

0.706
  recA Acinetobacter baylyi ADP1

72.384

97.175

0.703
  recA Glaesserella parasuis strain SC1401

70.538

99.718

0.703
  recA Ralstonia pseudosolanacearum GMI1000

74.214

89.831

0.667
  recA Neisseria gonorrhoeae MS11

71.779

92.09

0.661
  recA Neisseria gonorrhoeae MS11

71.779

92.09

0.661
  recA Neisseria gonorrhoeae strain FA1090

71.779

92.09

0.661
  recA Helicobacter pylori strain NCTC11637

61.628

97.175

0.599
  recA Helicobacter pylori 26695

61.047

97.175

0.593
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.444

93.503

0.593
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.517

90.113

0.59
  recA Latilactobacillus sakei subsp. sakei 23K

60

96.045

0.576
  recA Bacillus subtilis subsp. subtilis str. 168

63.24

90.678

0.573
  recA Streptococcus pneumoniae Rx1

61.61

91.243

0.562
  recA Streptococcus pneumoniae D39

61.61

91.243

0.562
  recA Streptococcus pneumoniae R6

61.61

91.243

0.562
  recA Streptococcus pneumoniae TIGR4

61.61

91.243

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.366

92.655

0.559
  recA Streptococcus mitis SK321

61.3

91.243

0.559
  recA Streptococcus mitis NCTC 12261

61.3

91.243

0.559
  recA Streptococcus mutans UA159

60.372

91.243

0.551
  recA Streptococcus pyogenes NZ131

60.062

91.243

0.548
  recA Lactococcus lactis subsp. cremoris KW2

57.895

91.243

0.528