Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LAJ19_RS12450 Genome accession   NZ_CP083455
Coordinates   2592832..2593896 (+) Length   354 a.a.
NCBI ID   WP_225476067.1    Uniprot ID   -
Organism   Deinococcus taeanensis strain TS293     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2587832..2598896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAJ19_RS12430 (LAJ19_12430) ilvA 2588743..2590296 (+) 1554 WP_225476063.1 threonine ammonia-lyase, biosynthetic -
  LAJ19_RS12435 (LAJ19_12435) - 2590373..2590699 (+) 327 WP_225476064.1 hypothetical protein -
  LAJ19_RS12440 (LAJ19_12440) - 2590956..2592167 (+) 1212 WP_225476065.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  LAJ19_RS12445 (LAJ19_12445) thpR 2592164..2592835 (+) 672 WP_225476066.1 RNA 2',3'-cyclic phosphodiesterase -
  LAJ19_RS12450 (LAJ19_12450) recA 2592832..2593896 (+) 1065 WP_225476067.1 recombinase RecA Machinery gene
  LAJ19_RS12455 (LAJ19_12455) - 2594130..2594714 (-) 585 WP_225476068.1 biotin transporter BioY -
  LAJ19_RS12460 (LAJ19_12460) - 2594772..2595710 (-) 939 WP_225523268.1 biotin--[acetyl-CoA-carboxylase] ligase -
  LAJ19_RS12465 (LAJ19_12465) - 2595854..2596243 (+) 390 WP_225476069.1 transcriptional repressor -
  LAJ19_RS12470 (LAJ19_12470) - 2596291..2596986 (+) 696 WP_225476070.1 hypothetical protein -
  LAJ19_RS12475 (LAJ19_12475) - 2597104..2597778 (+) 675 WP_225523269.1 MarC family protein -
  LAJ19_RS12480 (LAJ19_12480) - 2597884..2598441 (+) 558 WP_225476071.1 HNH endonuclease -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37493.16 Da        Isoelectric Point: 5.6324

>NTDB_id=605996 LAJ19_RS12450 WP_225476067.1 2592832..2593896(+) (recA) [Deinococcus taeanensis strain TS293]
MSKEKDIAAAPTDAKERAKAIETAMSQIEKAFGKGSIMKLGAESKLDVQAVSTGSLSLDLALGVGGVPKGRVTEIYGPES
GGKTTLALSIVAQSQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGAVDVVVVDSVAAL
TPRAEIEGEMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKIGVMYGNPETTTGGRALKFYASVRLDVRKIG
QPVKLGNDAIGNTVKVKTVKNKVAPPFKEVELTLMYGKGFDQLSDLVTLASDMEIIKKAGSFYSYNDERIGQGKEKAIAF
IAERPEMEAEIRTRVLGAIKEGRDPLAAVPSVAE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=605996 LAJ19_RS12450 WP_225476067.1 2592832..2593896(+) (recA) [Deinococcus taeanensis strain TS293]
ATGAGCAAAGAAAAAGACATCGCTGCCGCCCCCACCGACGCCAAAGAACGCGCCAAGGCCATCGAAACGGCCATGAGCCA
GATCGAGAAGGCGTTCGGCAAGGGCAGCATCATGAAACTCGGCGCCGAGAGCAAACTGGACGTGCAGGCCGTCAGCACCG
GCAGCCTGTCCCTGGACCTCGCGCTGGGCGTGGGCGGCGTGCCCAAGGGCCGCGTCACCGAGATCTACGGCCCGGAATCC
GGCGGGAAGACCACCCTGGCCCTGAGTATCGTCGCGCAGTCCCAGAAGGCCGGCGGGACCTGCGCCTTCATTGACGCCGA
GCACGCCCTGGACCCCGTGTACGCGCGGGCGCTGGGCGTCAACACCGACGAACTGCTCGTCTCGCAGCCAGACAACGGCG
AGCAGGCCCTGGAAATCATGGAACTGCTCGTCCGCAGCGGCGCCGTGGACGTGGTGGTCGTGGACTCCGTGGCGGCCCTG
ACGCCGCGCGCGGAAATCGAAGGCGAGATGGGCGACAGCCTCCCTGGCCTCCAGGCAAGATTGATGAGCCAGGCGCTGCG
CAAACTCACCGCGATTCTCAGCAAGACCGGGACCGCCGCGATCTTCATCAACCAGGTGCGCGAGAAGATCGGCGTGATGT
ACGGCAACCCCGAAACCACCACCGGGGGCCGCGCCCTGAAGTTCTACGCCAGCGTGCGCCTTGACGTCCGCAAGATCGGC
CAGCCGGTCAAGCTGGGCAACGACGCCATCGGCAACACTGTGAAGGTCAAGACCGTGAAGAACAAGGTCGCGCCGCCTTT
CAAGGAGGTCGAACTGACCCTGATGTACGGCAAGGGCTTCGATCAGCTCAGCGACCTTGTCACGCTCGCCAGCGACATGG
AGATCATCAAGAAGGCCGGCAGCTTCTACTCCTACAACGATGAGCGCATCGGGCAGGGCAAGGAGAAGGCCATCGCGTTC
ATCGCCGAGCGTCCTGAAATGGAAGCCGAGATCCGTACCCGCGTGCTGGGCGCCATCAAGGAAGGCCGCGACCCGCTGGC
CGCCGTGCCCAGCGTCGCTGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

89.826

97.175

0.873
  recA Streptococcus mitis SK321

61.538

99.153

0.61
  recA Glaesserella parasuis strain SC1401

63.69

94.915

0.605
  recA Acinetobacter baylyi ADP1

64.506

91.525

0.59
  recA Streptococcus pneumoniae R6

64.396

91.243

0.588
  recA Streptococcus pneumoniae Rx1

64.396

91.243

0.588
  recA Streptococcus pneumoniae D39

64.396

91.243

0.588
  recA Streptococcus pneumoniae TIGR4

64.396

91.243

0.588
  recA Streptococcus mitis NCTC 12261

64.087

91.243

0.585
  recA Acinetobacter baumannii D1279779

63.551

90.678

0.576
  recA Streptococcus pyogenes NZ131

62.848

91.243

0.573
  recA Streptococcus mutans UA159

62.848

91.243

0.573
  recA Latilactobacillus sakei subsp. sakei 23K

61.61

91.243

0.562
  recA Ralstonia pseudosolanacearum GMI1000

61.801

90.96

0.562
  recA Lactococcus lactis subsp. cremoris KW2

60.123

92.09

0.554
  recA Bacillus subtilis subsp. subtilis str. 168

61.25

90.395

0.554
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.3

88.418

0.551
  recA Vibrio cholerae strain A1552

62.3

88.418

0.551
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.076

89.266

0.545
  recA Neisseria gonorrhoeae strain FA1090

59.133

91.243

0.54
  recA Neisseria gonorrhoeae MS11

59.133

91.243

0.54
  recA Neisseria gonorrhoeae MS11

59.133

91.243

0.54
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

56.798

93.503

0.531
  recA Helicobacter pylori strain NCTC11637

58.075

90.96

0.528
  recA Pseudomonas stutzeri DSM 10701

57.362

92.09

0.528
  recA Helicobacter pylori 26695

57.764

90.96

0.525