Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LAD35_RS19735 Genome accession   NZ_CP083451
Coordinates   4303562..4304638 (-) Length   358 a.a.
NCBI ID   WP_224150624.1    Uniprot ID   -
Organism   Comamonas odontotermitis strain WLL     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4298562..4309638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAD35_RS19705 (LAD35_19705) - 4298842..4299546 (-) 705 WP_224152871.1 hypothetical protein -
  LAD35_RS19710 (LAD35_19710) - 4299683..4300165 (-) 483 WP_224150619.1 VOC family protein -
  LAD35_RS19715 (LAD35_19715) - 4300458..4300703 (-) 246 WP_224150620.1 VF530 family DNA-binding protein -
  LAD35_RS19720 (LAD35_19720) - 4300872..4301918 (-) 1047 WP_224150621.1 porin -
  LAD35_RS19725 (LAD35_19725) - 4301929..4302906 (-) 978 WP_224150622.1 tripartite tricarboxylate transporter substrate binding protein -
  LAD35_RS19730 (LAD35_19730) recX 4303004..4303459 (-) 456 WP_224150623.1 recombination regulator RecX -
  LAD35_RS19735 (LAD35_19735) recA 4303562..4304638 (-) 1077 WP_224150624.1 recombinase RecA Machinery gene
  LAD35_RS19740 (LAD35_19740) - 4304837..4305337 (+) 501 WP_224150625.1 MarR family winged helix-turn-helix transcriptional regulator -
  LAD35_RS19745 (LAD35_19745) - 4305432..4306361 (-) 930 WP_224150626.1 SdiA-regulated domain-containing protein -
  LAD35_RS19750 (LAD35_19750) - 4306585..4307265 (+) 681 WP_184704474.1 response regulator transcription factor -
  LAD35_RS19755 (LAD35_19755) - 4307334..4308788 (+) 1455 WP_224150627.1 sensor histidine kinase -
  LAD35_RS19760 (LAD35_19760) - 4308832..4309635 (-) 804 WP_224150628.1 SPOR domain-containing protein -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 38156.62 Da        Isoelectric Point: 4.7543

>NTDB_id=605965 LAD35_RS19735 WP_224150624.1 4303562..4304638(-) (recA) [Comamonas odontotermitis strain WLL]
MNATATKPEANTEKAKALAAALAQIEKQFGKGTIMKLGEGEAIEDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSG
KTTLTLQVIAEMQKLGGTCAFIDAEHALDTSYAQKLGVNLPDILISQPDTGEQALEIVDSLVRSGAVDLIVVDSVAALTP
KAEIEGEMGDQLPGLQARLMSQALRKLTATIKKTNCTVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTI
KKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEILDMGVNARIIEKSGAWYAYNGEKIGQGRDNSREFLRE
NPDLAIEIENKVRESLNISLRPAEDGVIAGPDADGEAA

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=605965 LAD35_RS19735 WP_224150624.1 4303562..4304638(-) (recA) [Comamonas odontotermitis strain WLL]
ATGAACGCCACCGCTACCAAGCCAGAAGCCAATACCGAAAAAGCCAAAGCCCTGGCTGCGGCGCTTGCCCAGATCGAAAA
GCAGTTCGGCAAGGGCACGATCATGAAGTTGGGAGAGGGCGAGGCGATTGAGGATATCCAGGTTGTCTCCACCGGCTCGC
TGGGGCTCGACATTGCCCTGGGCGTAGGCGGCCTGCCGCGTGGCCGTGTGATCGAGATCTACGGCCCTGAATCGTCCGGC
AAGACCACGCTGACGCTGCAGGTGATTGCCGAAATGCAAAAACTGGGCGGTACCTGTGCCTTCATCGACGCCGAGCACGC
GCTCGATACCAGCTATGCGCAAAAGCTGGGCGTGAACCTGCCGGACATACTGATCAGCCAGCCCGATACCGGCGAGCAGG
CGCTGGAGATCGTGGACAGCCTGGTGCGCTCGGGCGCCGTTGACCTGATCGTGGTGGACTCGGTCGCCGCCCTGACGCCC
AAGGCTGAAATCGAAGGCGAAATGGGCGACCAGTTGCCCGGCCTGCAGGCGCGCCTGATGAGCCAGGCGCTGCGCAAGCT
GACCGCCACCATCAAGAAGACCAACTGCACGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGTGTGATGTTCGGCA
GCCCCGAAACCACGACGGGCGGCAACGCGCTCAAGTTCTACGCCTCGGTGCGTCTCGATATCCGTCGCACCGGCACCATC
AAGAAGGGTGACGAAGCCATCGGTAATGAAACCAAGGTGAAGGTTGTCAAGAACAAGGTTTCGCCTCCGTTCAAGACCGC
CGAGTTCGACATCCTCTTTGGCGAAGGCATCTCGCGCGAAGGCGAAATCCTCGACATGGGCGTCAATGCCCGCATCATCG
AGAAAAGCGGCGCCTGGTATGCCTACAACGGAGAGAAGATCGGCCAGGGCCGCGACAACTCGCGCGAATTCCTGCGCGAG
AATCCCGACCTCGCCATCGAGATCGAGAACAAGGTGCGCGAAAGCCTGAACATCTCGCTGCGCCCCGCCGAAGACGGCGT
GATCGCAGGCCCCGATGCCGATGGAGAGGCTGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(16-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

83.175

87.989

0.732
  recA Glaesserella parasuis strain SC1401

70.149

93.575

0.656
  recA Neisseria gonorrhoeae MS11

72.586

89.665

0.651
  recA Neisseria gonorrhoeae strain FA1090

72.586

89.665

0.651
  recA Neisseria gonorrhoeae MS11

72.586

89.665

0.651
  recA Pseudomonas stutzeri DSM 10701

71.472

91.061

0.651
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.452

93.855

0.642
  recA Vibrio cholerae strain A1552

68.452

93.855

0.642
  recA Acinetobacter baylyi ADP1

70.588

90.223

0.637
  recA Acinetobacter baumannii D1279779

70.588

90.223

0.637
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.374

95.531

0.634
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

68.373

92.737

0.634
  recA Helicobacter pylori strain NCTC11637

63.609

94.413

0.601
  recA Helicobacter pylori 26695

63.609

94.413

0.601
  recA Latilactobacillus sakei subsp. sakei 23K

62.5

93.855

0.587
  recA Bacillus subtilis subsp. subtilis str. 168

64.22

91.341

0.587
  recA Lactococcus lactis subsp. cremoris KW2

62.769

90.782

0.57
  recA Streptococcus pyogenes NZ131

62.462

90.782

0.567
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.941

94.134

0.564
  recA Streptococcus pneumoniae D39

60.909

92.179

0.561
  recA Streptococcus pneumoniae Rx1

60.909

92.179

0.561
  recA Streptococcus pneumoniae R6

60.909

92.179

0.561
  recA Streptococcus pneumoniae TIGR4

60.909

92.179

0.561
  recA Streptococcus mitis NCTC 12261

61.538

90.782

0.559
  recA Streptococcus mutans UA159

61.538

90.782

0.559
  recA Streptococcus mitis SK321

61.538

90.782

0.559