Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LAJ50_RS12970 Genome accession   NZ_CP083376
Coordinates   2906046..2907080 (-) Length   344 a.a.
NCBI ID   WP_130552978.1    Uniprot ID   -
Organism   Pseudoxanthomonas sp. X-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2896688..2910276 2906046..2907080 within 0


Gene organization within MGE regions


Location: 2896688..2910276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAJ50_RS12925 (LAJ50_12915) - 2896688..2898091 (+) 1404 WP_130518959.1 PhoH family protein -
  LAJ50_RS12930 (LAJ50_12920) - 2898152..2899000 (+) 849 WP_138651945.1 alpha/beta fold hydrolase -
  LAJ50_RS12935 (LAJ50_12925) - 2899073..2900356 (+) 1284 WP_138651943.1 nucleotide sugar dehydrogenase -
  LAJ50_RS12940 (LAJ50_12930) - 2900392..2901399 (+) 1008 WP_130552974.1 NAD-dependent epimerase -
  LAJ50_RS12955 (LAJ50_12945) csrA 2902244..2902453 (-) 210 WP_130552975.1 carbon storage regulator CsrA -
  LAJ50_RS12960 (LAJ50_12950) alaS 2902597..2905245 (-) 2649 WP_130552976.1 alanine--tRNA ligase -
  LAJ50_RS12965 (LAJ50_12955) recX 2905360..2905881 (-) 522 WP_138651941.1 recombination regulator RecX -
  LAJ50_RS12970 (LAJ50_12960) recA 2906046..2907080 (-) 1035 WP_130552978.1 recombinase RecA Machinery gene
  LAJ50_RS12975 (LAJ50_12965) lexA 2907254..2907901 (-) 648 WP_130552979.1 transcriptional repressor LexA -
  LAJ50_RS12980 (LAJ50_12970) - 2908023..2908259 (+) 237 WP_138651939.1 hypothetical protein -
  LAJ50_RS12985 (LAJ50_12975) - 2908372..2908584 (+) 213 WP_130552981.1 helix-turn-helix transcriptional regulator -
  LAJ50_RS12990 (LAJ50_12980) - 2908588..2910255 (-) 1668 WP_138651981.1 AarF/UbiB family protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37155.62 Da        Isoelectric Point: 4.9723

>NTDB_id=605446 LAJ50_RS12970 WP_130552978.1 2906046..2907080(-) (recA) [Pseudoxanthomonas sp. X-1]
MDENKKRALAAALTQIERQFGKGSVMRMGDRVIEATEVIPTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIA
ECQKQGGTAAFIDAEHALDPIYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSGSVDIVVIDSVAALTPKAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNTLVIFINQLRMKIGVMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKKGDEIIG
NQTRIKVVKNKMAPPFKQVVTEILYGEGISREGELIDMGVEAKIVDKAGAWYSYGSERIGQGKDNSRTYLRENPEVAAKL
EAELREKFQPAEVAGRENDEGDDA

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=605446 LAJ50_RS12970 WP_130552978.1 2906046..2907080(-) (recA) [Pseudoxanthomonas sp. X-1]
ATGGACGAGAACAAGAAGCGCGCCCTGGCCGCGGCCCTGACCCAGATCGAGCGCCAGTTCGGCAAGGGCTCGGTGATGCG
CATGGGCGACCGCGTCATCGAGGCCACCGAGGTGATCCCGACCGGTTCGCTAATGCTGGACATCGCCCTGGGCATCGGCG
GCCTGCCCAAGGGGCGCGTGGTCGAGATCTACGGACCCGAGTCCTCCGGCAAGACCACCCTGACCCTGCAGGCCATCGCC
GAGTGCCAGAAGCAGGGCGGCACGGCCGCCTTCATCGACGCCGAGCACGCGCTGGACCCGATCTACGCGGCCAAGCTGGG
CGTCAATGTCGACGACCTGCTGCTGTCCCAGCCCGATACCGGCGAGCAGGCGCTGGAGATCGCCGACATGCTGGTGCGCT
CGGGTTCGGTGGACATCGTGGTCATCGACTCGGTCGCCGCCCTGACCCCCAAGGCCGAAATCGAAGGCGAGATGGGCGAC
CAGCTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCCCTGCGCAAGCTGACCGGCAACATCAAGCGCTCCAACACCCT
GGTGATCTTCATCAACCAGCTGCGCATGAAGATCGGCGTGATGATGCCCGGCCAGAGCCCGGAAACCACCACCGGCGGCA
ACGCGCTGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCATCGGCGCGATCAAGAAGGGCGACGAGATCATCGGC
AACCAGACCCGGATCAAGGTCGTCAAGAACAAGATGGCCCCGCCGTTCAAGCAGGTCGTTACCGAGATCCTGTACGGCGA
GGGCATCAGCCGCGAGGGCGAACTGATCGACATGGGCGTGGAGGCCAAGATCGTGGACAAGGCCGGCGCCTGGTACAGCT
ACGGCTCCGAGCGCATCGGCCAGGGCAAGGACAACTCCCGCACCTACCTGCGCGAGAACCCGGAGGTGGCCGCCAAGCTG
GAAGCCGAGCTGCGCGAGAAGTTCCAGCCGGCCGAGGTTGCCGGCCGTGAGAACGACGAAGGCGATGACGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

72.561

95.349

0.692
  recA Ralstonia pseudosolanacearum GMI1000

76.038

90.988

0.692
  recA Acinetobacter baylyi ADP1

72.256

95.349

0.689
  recA Acinetobacter baumannii D1279779

71.646

95.349

0.683
  recA Vibrio cholerae strain A1552

71.472

94.767

0.677
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.472

94.767

0.677
  recA Neisseria gonorrhoeae MS11

69.632

94.767

0.66
  recA Neisseria gonorrhoeae MS11

69.632

94.767

0.66
  recA Neisseria gonorrhoeae strain FA1090

69.632

94.767

0.66
  recA Glaesserella parasuis strain SC1401

65.607

100

0.66
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.209

100

0.622
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.473

97.093

0.616
  recA Latilactobacillus sakei subsp. sakei 23K

61.934

96.221

0.596
  recA Bacillus subtilis subsp. subtilis str. 168

63.077

94.477

0.596
  recA Helicobacter pylori strain NCTC11637

61.145

96.512

0.59
  recA Helicobacter pylori 26695

60.843

96.512

0.587
  recA Streptococcus mitis NCTC 12261

58.601

99.709

0.584
  recA Streptococcus pneumoniae R6

60.976

95.349

0.581
  recA Streptococcus pneumoniae Rx1

60.976

95.349

0.581
  recA Streptococcus pneumoniae D39

60.976

95.349

0.581
  recA Streptococcus pneumoniae TIGR4

60.976

95.349

0.581
  recA Streptococcus mitis SK321

60.671

95.349

0.578
  recA Streptococcus mutans UA159

59.697

95.93

0.573
  recA Streptococcus pyogenes NZ131

59.394

95.93

0.57
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.084

97.093

0.564
  recA Lactococcus lactis subsp. cremoris KW2

59.692

94.477

0.564