Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   K8Z39_RS29785 Genome accession   NZ_CP083085
Coordinates   5688542..5689645 (-) Length   367 a.a.
NCBI ID   WP_042596926.1    Uniprot ID   A0A9X6KV19
Organism   Bacillus thuringiensis strain B401     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 5687379..5712954 5688542..5689645 within 0


Gene organization within MGE regions


Location: 5687379..5712954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8Z39_RS29780 (K8Z39_29695) - 5687379..5688362 (+) 984 WP_042596929.1 helix-turn-helix domain-containing protein -
  K8Z39_RS29785 (K8Z39_29700) recA 5688542..5689645 (-) 1104 WP_042596926.1 recombinase RecA Machinery gene
  K8Z39_RS29790 (K8Z39_29705) - 5690047..5691003 (-) 957 WP_021729802.1 N-acetylmuramoyl-L-alanine amidase -
  K8Z39_RS29795 (K8Z39_29710) - 5691003..5691428 (-) 426 WP_000373898.1 phage holin family protein -
  K8Z39_RS29800 (K8Z39_29715) - 5691466..5691840 (-) 375 WP_048549194.1 hypothetical protein -
  K8Z39_RS29805 (K8Z39_29720) - 5691856..5696712 (-) 4857 WP_048549193.1 phage tail spike protein -
  K8Z39_RS29810 (K8Z39_29725) - 5696709..5698187 (-) 1479 WP_021729012.1 distal tail protein Dit -
  K8Z39_RS29815 (K8Z39_29730) - 5698200..5701139 (-) 2940 WP_016049860.1 phage tail tape measure protein -
  K8Z39_RS29820 (K8Z39_29735) - 5701140..5701397 (-) 258 WP_016090412.1 hypothetical protein -
  K8Z39_RS29825 (K8Z39_29740) - 5701451..5701879 (-) 429 WP_016049858.1 hypothetical protein -
  K8Z39_RS29830 (K8Z39_29745) - 5701926..5702519 (-) 594 WP_016049857.1 hypothetical protein -
  K8Z39_RS29835 (K8Z39_29750) - 5702534..5702896 (-) 363 WP_016049856.1 hypothetical protein -
  K8Z39_RS29840 (K8Z39_29755) - 5702902..5703309 (-) 408 WP_016049855.1 HK97-gp10 family putative phage morphogenesis protein -
  K8Z39_RS29845 (K8Z39_29760) - 5703284..5703628 (-) 345 WP_016049854.1 head-tail adaptor protein -
  K8Z39_RS29850 (K8Z39_29765) - 5703625..5703933 (-) 309 WP_016049853.1 phage related protein gp15 -
  K8Z39_RS29855 (K8Z39_29770) - 5703984..5704826 (-) 843 WP_016049852.1 hypothetical protein -
  K8Z39_RS29860 (K8Z39_29775) - 5704844..5705524 (-) 681 WP_016049851.1 DUF4355 domain-containing protein -
  K8Z39_RS29865 (K8Z39_29780) - 5705604..5705876 (-) 273 WP_016049850.1 DUF2829 domain-containing protein -
  K8Z39_RS29870 (K8Z39_29785) - 5705876..5706643 (-) 768 WP_016090413.1 phage minor head protein -
  K8Z39_RS29875 (K8Z39_29790) - 5706717..5708150 (-) 1434 WP_016049848.1 phage portal protein -
  K8Z39_RS29880 (K8Z39_29795) - 5708163..5709437 (-) 1275 WP_016049847.1 PBSX family phage terminase large subunit -
  K8Z39_RS29885 (K8Z39_29800) - 5709427..5710341 (-) 915 WP_016049846.1 terminase small subunit -
  K8Z39_RS29890 (K8Z39_29805) - 5710492..5710704 (-) 213 WP_000762692.1 hypothetical protein -
  K8Z39_RS29895 (K8Z39_29810) - 5710691..5711020 (-) 330 WP_016049845.1 hypothetical protein -
  K8Z39_RS29900 (K8Z39_29815) - 5711053..5711430 (-) 378 WP_228220185.1 hypothetical protein -
  K8Z39_RS29905 (K8Z39_29820) - 5711464..5711784 (-) 321 WP_016049873.1 hypothetical protein -
  K8Z39_RS29910 (K8Z39_29825) - 5712044..5712307 (-) 264 WP_016049872.1 DUF2829 domain-containing protein -
  K8Z39_RS29915 (K8Z39_29830) - 5712307..5712549 (-) 243 WP_016049871.1 DUF2829 domain-containing protein -
  K8Z39_RS29920 (K8Z39_29835) - 5712688..5712954 (-) 267 WP_016049870.1 hypothetical protein -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 39885.48 Da        Isoelectric Point: 5.0362

>NTDB_id=604611 K8Z39_RS29785 WP_042596926.1 5688542..5689645(-) (recA) [Bacillus thuringiensis strain B401]
MFWKGAIHVAIIENTTQGKEKALEEALKKIVKEFGTGAIMKLGERPEQKISVVSSGSIGLDIALGVGGYPKGRITEIYGP
ESSGKTTLALHAIAEAQKEGGTAAFIDAEHALDPIYAQKLGVNIDELLMSQPDTGEQALEVAEALVRSGAVDIIVIDSVA
ALVPKAEIDGDMGDSHMALQARLMGQALRKLSGAVSKNGVIAIFLNQLREKVGVSFGSPETTPGGRALKFYSTIRLDVRR
GEQLKGKDSEVLGNKTKVKVVKNKVAPPFRNLEFDILYGEGISLEGELIDIGVELDIVQKSGAWYSYQEERLGQGRDNAK
QFLKENENIRNSVRNEIYEYYSPKEDSVVVKAELIKENEPSTLKESE

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=604611 K8Z39_RS29785 WP_042596926.1 5688542..5689645(-) (recA) [Bacillus thuringiensis strain B401]
ATGTTCTGGAAAGGGGCAATTCATGTGGCAATAATTGAAAATACAACTCAAGGAAAAGAGAAGGCATTAGAAGAAGCTCT
GAAGAAAATTGTAAAAGAATTTGGCACAGGTGCTATTATGAAACTGGGCGAGCGCCCTGAACAAAAGATATCGGTTGTAT
CAAGTGGTTCTATAGGATTAGATATCGCATTAGGCGTTGGTGGATACCCGAAAGGTCGTATTACTGAAATATATGGCCCT
GAGTCTTCAGGGAAGACAACACTAGCATTACACGCAATTGCAGAAGCGCAAAAAGAAGGTGGAACAGCGGCATTTATTGA
TGCAGAGCATGCACTTGATCCTATTTATGCACAGAAGTTAGGTGTGAATATTGATGAACTGCTCATGTCACAACCAGACA
CAGGAGAGCAAGCATTAGAGGTTGCAGAAGCTCTAGTTAGAAGTGGGGCTGTAGATATCATTGTAATAGATTCTGTAGCT
GCTCTAGTCCCGAAAGCGGAAATTGATGGGGACATGGGAGATTCGCATATGGCCTTACAAGCTAGATTGATGGGACAAGC
TCTAAGAAAACTTTCAGGAGCAGTGTCTAAAAATGGAGTAATAGCTATATTTTTGAATCAACTTAGAGAAAAAGTTGGCG
TTTCTTTCGGGAGTCCCGAGACGACACCAGGTGGTAGAGCGTTAAAGTTCTATTCGACAATCCGACTAGATGTACGTCGA
GGGGAGCAGTTGAAAGGAAAAGATAGTGAAGTTTTAGGGAATAAAACAAAAGTGAAAGTAGTAAAAAATAAAGTTGCTCC
ACCATTTAGGAATCTGGAATTTGATATTCTGTATGGGGAAGGAATCTCCTTAGAGGGAGAGCTTATTGATATTGGTGTAG
AATTAGATATTGTTCAGAAAAGTGGGGCATGGTACTCGTATCAAGAAGAACGTCTTGGACAGGGTAGAGACAATGCCAAA
CAATTTCTGAAAGAGAATGAAAACATACGTAATTCTGTTCGAAATGAAATTTATGAATACTATTCTCCAAAAGAAGACTC
TGTTGTTGTAAAAGCGGAGCTTATAAAAGAAAATGAGCCTAGCACTTTAAAAGAATCTGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

73.716

90.191

0.665
  recA Streptococcus mutans UA159

64.058

94.005

0.602
  recA Streptococcus mitis NCTC 12261

66.873

88.011

0.589
  recA Latilactobacillus sakei subsp. sakei 23K

64.759

90.463

0.586
  recA Streptococcus pneumoniae TIGR4

65.749

89.101

0.586
  recA Streptococcus pneumoniae D39

65.749

89.101

0.586
  recA Streptococcus pneumoniae R6

65.749

89.101

0.586
  recA Streptococcus pneumoniae Rx1

65.749

89.101

0.586
  recA Streptococcus mitis SK321

66.563

88.011

0.586
  recA Streptococcus pyogenes NZ131

66.254

88.011

0.583
  recA Lactococcus lactis subsp. cremoris KW2

62.575

91.008

0.569
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.142

90.191

0.569
  recA Neisseria gonorrhoeae strain FA1090

65.312

87.193

0.569
  recA Neisseria gonorrhoeae MS11

65.312

87.193

0.569
  recA Neisseria gonorrhoeae MS11

65.312

87.193

0.569
  recA Acinetobacter baumannii D1279779

59.429

95.368

0.567
  recA Ralstonia pseudosolanacearum GMI1000

63.222

89.646

0.567
  recA Acinetobacter baylyi ADP1

59.942

94.55

0.567
  recA Glaesserella parasuis strain SC1401

59.366

94.55

0.561
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.438

87.193

0.553
  recA Helicobacter pylori strain NCTC11637

59.357

93.188

0.553
  recA Helicobacter pylori 26695

59.357

93.188

0.553
  recA Pseudomonas stutzeri DSM 10701

61.682

87.466

0.54
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.372

88.011

0.531
  recA Vibrio cholerae strain A1552

60.372

88.011

0.531
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.012

89.373

0.51