Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   K8B83_RS08445 Genome accession   NZ_CP082926
Coordinates   1869001..1870065 (+) Length   354 a.a.
NCBI ID   WP_223419558.1    Uniprot ID   -
Organism   Shewanella inventionis strain D1489     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1864001..1875065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8B83_RS08430 (K8B83_08385) - 1864070..1865002 (+) 933 WP_373284893.1 peptidoglycan DD-metalloendopeptidase family protein -
  K8B83_RS08435 (K8B83_08390) rpoS 1865080..1866051 (+) 972 WP_188738749.1 RNA polymerase sigma factor RpoS -
  K8B83_RS08440 (K8B83_08395) mutS 1866138..1868714 (-) 2577 WP_188738751.1 DNA mismatch repair protein MutS -
  K8B83_RS08445 (K8B83_08400) recA 1869001..1870065 (+) 1065 WP_223419558.1 recombinase RecA Machinery gene
  K8B83_RS08455 (K8B83_08405) alaS 1870740..1873364 (+) 2625 WP_223419560.1 alanine--tRNA ligase -
  K8B83_RS08460 (K8B83_08410) csrA 1873810..1874007 (+) 198 WP_188738756.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37579.95 Da        Isoelectric Point: 4.9357

>NTDB_id=603635 K8B83_RS08445 WP_223419558.1 1869001..1870065(+) (recA) [Shewanella inventionis strain D1489]
MKVDPNKEKALAAVLGQIEKQFGKGSIMKLGEDRTMDVETISTGSLSLDVALGAGGLPMGRIVEVYGPESSGKTTLTLEV
IAAAQRQGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVG
NETRVKVVKNKIAAPFKQAEFQILYGQGINRTGELVDLGVQHKIVDKAGAWYSYKGEKIGQGRANAGKFLTENPAIAAEI
DATLRTMLLAGGAASASSADDGDENIDFETGEVF

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=603635 K8B83_RS08445 WP_223419558.1 1869001..1870065(+) (recA) [Shewanella inventionis strain D1489]
ATGAAGGTTGATCCAAATAAAGAGAAAGCACTAGCCGCCGTTTTAGGCCAAATTGAAAAACAATTTGGTAAAGGCTCAAT
TATGAAATTGGGCGAAGATCGCACAATGGATGTTGAAACTATCTCTACCGGTTCACTTTCGTTAGACGTAGCGTTAGGCG
CTGGTGGTTTACCAATGGGTCGTATCGTTGAAGTGTACGGACCAGAATCATCAGGTAAAACCACATTAACACTTGAAGTG
ATTGCAGCAGCTCAACGCCAAGGTAAAACCTGTGCCTTTATTGATGCAGAGCATGCATTAGATCCTATCTATGCTAAAAA
GCTAGGCGTAGATATTGATAACCTACTTTGTTCACAGCCTGACACAGGTGAGCAAGCATTGGAAATTTGTGATGCGTTAA
CACGCTCTGGCGCAGTCGATGTCATTATTGTTGACTCAGTAGCTGCACTTACACCTAAAGCTGAAATTGAAGGCGAAATC
GGTGACTCTCACATGGGCTTAGCGGCACGTATGATGAGCCAAGCAATGCGTAAACTTGCAGGTAACCTTAAGCAATCAAA
TACTTTGCTTATCTTCATTAACCAAATTCGTATGAAGATTGGTGTGATGTTTGGTAACCCAGAAACCACTACAGGTGGTA
ACGCGCTTAAGTTTTATGCCTCAGTACGTTTAGATATTCGCCGCACAGGTGCAGTAAAAGAAGGTGATGAAGTTGTTGGT
AACGAAACTCGCGTTAAAGTCGTAAAAAACAAAATTGCAGCTCCTTTTAAACAAGCTGAATTCCAAATTTTATATGGTCA
AGGCATTAACCGTACTGGTGAATTGGTTGATTTAGGTGTACAGCACAAAATTGTTGATAAAGCCGGTGCATGGTATAGCT
ACAAAGGTGAGAAAATTGGCCAGGGCCGTGCCAATGCGGGTAAATTCTTAACAGAAAATCCAGCTATTGCTGCTGAAATT
GATGCAACATTACGTACCATGCTACTTGCAGGCGGTGCTGCTAGCGCGTCAAGTGCTGATGACGGCGATGAAAACATTGA
TTTTGAAACAGGCGAAGTTTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

81.105

97.175

0.788
  recA Vibrio cholerae O1 biovar El Tor strain E7946

81.105

97.175

0.788
  recA Pseudomonas stutzeri DSM 10701

73.512

94.915

0.698
  recA Acinetobacter baumannii D1279779

70.468

96.61

0.681
  recA Acinetobacter baylyi ADP1

69.653

97.74

0.681
  recA Glaesserella parasuis strain SC1401

67.723

98.023

0.664
  recA Neisseria gonorrhoeae MS11

68.421

91.243

0.624
  recA Neisseria gonorrhoeae MS11

68.421

91.243

0.624
  recA Neisseria gonorrhoeae strain FA1090

68.421

91.243

0.624
  recA Ralstonia pseudosolanacearum GMI1000

70.74

87.853

0.621
  recA Streptococcus mitis SK321

58.824

100

0.593
  recA Streptococcus mitis NCTC 12261

58.824

100

0.593
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.641

96.893

0.588
  recA Bacillus subtilis subsp. subtilis str. 168

63.75

90.395

0.576
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.299

94.633

0.571
  recA Streptococcus pneumoniae R6

62.346

91.525

0.571
  recA Streptococcus pneumoniae TIGR4

62.346

91.525

0.571
  recA Streptococcus pneumoniae Rx1

62.346

91.525

0.571
  recA Streptococcus pneumoniae D39

62.346

91.525

0.571
  recA Streptococcus mutans UA159

61.61

91.243

0.562
  recA Helicobacter pylori strain NCTC11637

60.736

92.09

0.559
  recA Helicobacter pylori 26695

60.429

92.09

0.556
  recA Streptococcus pyogenes NZ131

60.802

91.525

0.556
  recA Latilactobacillus sakei subsp. sakei 23K

60.815

90.113

0.548
  recA Lactococcus lactis subsp. cremoris KW2

58.841

92.655

0.545
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.896

92.09

0.542