Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   K6958_RS16230 Genome accession   NZ_CP082904
Coordinates   3401200..3402270 (-) Length   356 a.a.
NCBI ID   WP_249892072.1    Uniprot ID   -
Organism   Mixta hanseatica isolate X22927     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3396200..3407270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6958_RS16215 (K6958_16215) csrA 3397376..3397555 (-) 180 WP_038624529.1 carbon storage regulator CsrA -
  K6958_RS16220 (K6958_16220) alaS 3397802..3400429 (-) 2628 WP_249892070.1 alanine--tRNA ligase -
  K6958_RS16225 (K6958_16225) - 3400567..3401076 (-) 510 WP_249892071.1 regulatory protein RecX -
  K6958_RS16230 (K6958_16230) recA 3401200..3402270 (-) 1071 WP_249892072.1 recombinase RecA Machinery gene
  K6958_RS16235 (K6958_16235) pncC 3402365..3402865 (-) 501 WP_249892073.1 nicotinamide-nucleotide amidase -
  K6958_RS16240 (K6958_16240) - 3403260..3404147 (+) 888 WP_249892074.1 dihydrodipicolinate synthase family protein -
  K6958_RS16245 (K6958_16245) - 3404205..3404546 (-) 342 WP_249892075.1 zinc ribbon domain-containing protein YjdM -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38229.67 Da        Isoelectric Point: 4.9555

>NTDB_id=603416 K6958_RS16230 WP_249892072.1 3401200..3402270(-) (recA) [Mixta hanseatica isolate X22927]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDNVVG
SETRVKVVKNKIAAPFKQAEFQIMYGEGINIYGELVDLGVKHKLIEKAGAWYSYNGDKIGQGKANASNYLKENSAVANEI
EQKLRDMLLNNPVEEGKAAVPAENYEDTASETNEDF

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=603416 K6958_RS16230 WP_249892072.1 3401200..3402270(-) (recA) [Mixta hanseatica isolate X22927]
ATGGCTATCGACGAAAACAAGCAAAAGGCTCTGGCAGCAGCGCTGGGCCAAATTGAGAAGCAATTTGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGCTCAATGGATGTGGAAACCATCTCGACCGGTTCACTTTCGCTTGATATCGCTCTTGGCG
CTGGCGGCCTGCCAATGGGCCGTATTGTTGAGATTTACGGTCCGGAATCTTCCGGTAAAACCACGCTGACGCTGCAGGTG
ATTGCCGCCGCACAGCGTAAAGGTAAAACCTGCGCCTTTATCGATGCTGAACACGCGCTGGACCCGGTTTATGCGAAAAA
GCTGGGCGTAGATATCGATAATCTGCTTTGTTCTCAGCCCGATACGGGCGAGCAGGCGCTGGAGATCTGTGATGCGCTGG
CGCGTTCCGGTGCGGTAGACGTAATCATCGTCGACTCCGTGGCGGCGCTGACGCCGAAAGCGGAAATCGAAGGTGAAATC
GGTGACTCACACATGGGTCTGGCGGCGCGTATGATGAGCCAGGCGATGCGTAAGCTGGCCGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTTATCAACCAGATCCGTATGAAAATCGGCGTTATGTTCGGTAACCCGGAAACCACTACCGGTGGTA
ACGCGCTGAAGTTCTACGCTTCCGTGCGCCTTGATATTCGCCGTATCGGCGCGATCAAAGAGGGCGACAACGTCGTCGGC
AGCGAAACGCGCGTTAAAGTGGTGAAAAACAAGATCGCCGCGCCGTTTAAACAGGCTGAATTCCAGATCATGTACGGTGA
AGGGATCAACATCTACGGCGAGCTGGTGGATCTGGGCGTGAAGCACAAGCTGATCGAGAAGGCGGGCGCATGGTATAGCT
ACAATGGCGATAAAATTGGCCAGGGTAAAGCGAATGCCAGCAACTACCTGAAGGAAAACAGCGCTGTGGCTAACGAAATC
GAGCAGAAACTGCGCGACATGCTGCTGAACAATCCTGTTGAGGAAGGTAAAGCGGCTGTCCCAGCCGAGAATTACGAAGA
TACCGCTAGCGAAACTAACGAAGACTTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

85.976

92.135

0.792
  recA Vibrio cholerae O1 biovar El Tor strain E7946

85.976

92.135

0.792
  recA Pseudomonas stutzeri DSM 10701

75.535

91.854

0.694
  recA Glaesserella parasuis strain SC1401

68.946

98.596

0.68
  recA Acinetobacter baylyi ADP1

70.145

96.91

0.68
  recA Acinetobacter baumannii D1279779

73.7

91.854

0.677
  recA Ralstonia pseudosolanacearum GMI1000

67.576

92.697

0.626
  recA Neisseria gonorrhoeae MS11

68.21

91.011

0.621
  recA Neisseria gonorrhoeae MS11

68.21

91.011

0.621
  recA Neisseria gonorrhoeae strain FA1090

68.21

91.011

0.621
  recA Latilactobacillus sakei subsp. sakei 23K

58.974

98.596

0.581
  recA Helicobacter pylori strain NCTC11637

62.048

93.258

0.579
  recA Helicobacter pylori 26695

61.747

93.258

0.576
  recA Lactococcus lactis subsp. cremoris KW2

63.158

90.73

0.573
  recA Bacillus subtilis subsp. subtilis str. 168

61.818

92.697

0.573
  recA Streptococcus mitis SK321

62.539

90.73

0.567
  recA Streptococcus mitis NCTC 12261

62.229

90.73

0.565
  recA Streptococcus pyogenes NZ131

61.846

91.292

0.565
  recA Streptococcus pneumoniae TIGR4

61.92

90.73

0.562
  recA Streptococcus pneumoniae Rx1

61.92

90.73

0.562
  recA Streptococcus pneumoniae D39

61.92

90.73

0.562
  recA Streptococcus pneumoniae R6

61.92

90.73

0.562
  recA Streptococcus mutans UA159

61.231

91.292

0.559
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.856

91.854

0.559
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.337

93.258

0.553
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.816

91.573

0.548