Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   K8O95_RS20305 Genome accession   NZ_CP082887
Coordinates   4400244..4401308 (-) Length   354 a.a.
NCBI ID   WP_268884725.1    Uniprot ID   A0A0K0MIW2
Organism   Aeromonas enteropelogenes strain FDAARGOS_1459     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4395244..4406308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8O95_RS20290 (K8O95_20255) - 4395385..4396623 (-) 1239 WP_026456467.1 aspartate kinase -
  K8O95_RS20295 (K8O95_20260) alaS 4396640..4399264 (-) 2625 WP_201941551.1 alanine--tRNA ligase -
  K8O95_RS20300 (K8O95_20265) - 4399701..4400201 (-) 501 WP_026456469.1 regulatory protein RecX -
  K8O95_RS20305 (K8O95_20270) recA 4400244..4401308 (-) 1065 WP_268884725.1 recombinase RecA Machinery gene
  K8O95_RS20310 (K8O95_20275) - 4401389..4401880 (-) 492 WP_223379281.1 CinA family protein -
  K8O95_RS20315 (K8O95_20280) mutS 4402058..4404640 (+) 2583 WP_223379283.1 DNA mismatch repair protein MutS -
  K8O95_RS20320 (K8O95_20285) - 4404707..4405606 (-) 900 WP_223379285.1 hypothetical protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37997.60 Da        Isoelectric Point: 4.8233

>NTDB_id=603381 K8O95_RS20305 WP_268884725.1 4400244..4401308(-) (recA) [Aeromonas enteropelogenes strain FDAARGOS_1459]
MDQNKQKALAAALGQIEKQFGKGSIMRLGDSKTMDIEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIA
EAQKKGKTCAFVDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIEGEMGD
SHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE
TRVKVVKNKVAPPFKQAEFQIFYGAGISKEGELVDLGVKHKLIDKAGAWYSYNGEKIGQGKANVMKLFAENKAMAAEVEA
KLRELLLSGAVPADDKAVTAEEDEFDVESEQEFE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=603381 K8O95_RS20305 WP_268884725.1 4400244..4401308(-) (recA) [Aeromonas enteropelogenes strain FDAARGOS_1459]
ATGGATCAGAACAAACAGAAGGCACTGGCGGCTGCGCTGGGTCAGATCGAAAAGCAGTTTGGCAAAGGCTCCATCATGCG
TCTGGGCGACAGCAAGACCATGGACATCGAAGCCATTTCTACCGGTTCTCTCTCCCTGGACGTGGCGCTGGGGATCGGTG
GTCTGCCATGCGGTCGTATCGTCGAGATCTACGGCCCGGAATCTTCCGGTAAAACCACCCTCACCCTGCAGGTGATCGCG
GAAGCCCAGAAGAAGGGCAAGACCTGTGCCTTCGTCGATGCGGAGCACGCACTCGACCCCATCTATGCCGCCAAACTGGG
CGTCAACGTCGATGACCTGTTGATCTCCCAGCCGGATACCGGCGAACAGGCGCTCGAGATCTGCGACATGCTGGTGCGCT
CCAACGCCGTTGACGTCATCATCGTCGACTCCGTGGCCGCCCTGACCCCGAAAGCGGAAATCGAGGGCGAGATGGGTGAC
TCCCACGTCGGCCTGCAGGCTCGTCTGATGTCCCAGGCGCTGCGTAAATTGACCGCCAACATCAAGAACGCCAACTGCCT
GTGCATCTTCATCAACCAGATCCGGATGAAGATCGGTGTCATGTTCGGCAGCCCGGAGACCACGACCGGTGGTAACGCAT
TGAAGTTCTATGCCTCCGTGCGTCTGGATATTCGTCGTACCGGCGCCATCAAGGAAGGGGACGAAGTGGTCGGCAACGAG
ACCCGCGTCAAGGTGGTCAAGAACAAGGTGGCCCCGCCCTTCAAGCAGGCCGAATTCCAGATTTTCTACGGCGCCGGCAT
CTCCAAAGAGGGCGAGCTGGTGGATCTGGGGGTCAAGCACAAGCTGATCGACAAGGCCGGTGCCTGGTACAGCTATAACG
GCGAGAAGATCGGTCAGGGCAAGGCCAACGTGATGAAGCTGTTTGCCGAGAACAAGGCCATGGCTGCCGAGGTGGAGGCC
AAGCTGCGCGAACTGCTGCTCTCCGGCGCTGTTCCTGCCGATGACAAGGCGGTCACCGCGGAAGAAGACGAGTTCGACGT
CGAAAGCGAACAAGAGTTCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K0MIW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

77.011

98.305

0.757
  recA Vibrio cholerae strain A1552

79.268

92.655

0.734
  recA Vibrio cholerae O1 biovar El Tor strain E7946

79.268

92.655

0.734
  recA Acinetobacter baumannii D1279779

71.388

99.718

0.712
  recA Glaesserella parasuis strain SC1401

70.255

99.718

0.701
  recA Acinetobacter baylyi ADP1

71.802

97.175

0.698
  recA Ralstonia pseudosolanacearum GMI1000

73.494

93.785

0.689
  recA Neisseria gonorrhoeae MS11

72.393

92.09

0.667
  recA Neisseria gonorrhoeae MS11

72.393

92.09

0.667
  recA Neisseria gonorrhoeae strain FA1090

72.393

92.09

0.667
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.048

93.503

0.599
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.517

90.113

0.59
  recA Helicobacter pylori strain NCTC11637

64

91.808

0.588
  recA Helicobacter pylori 26695

63.385

91.808

0.582
  recA Latilactobacillus sakei subsp. sakei 23K

60.355

95.48

0.576
  recA Bacillus subtilis subsp. subtilis str. 168

63.24

90.678

0.573
  recA Streptococcus pneumoniae Rx1

61.61

91.243

0.562
  recA Streptococcus mitis SK321

61.61

91.243

0.562
  recA Streptococcus pneumoniae D39

61.61

91.243

0.562
  recA Streptococcus pneumoniae R6

61.61

91.243

0.562
  recA Streptococcus pneumoniae TIGR4

61.61

91.243

0.562
  recA Streptococcus mitis NCTC 12261

61.3

91.243

0.559
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.756

92.655

0.554
  recA Streptococcus mutans UA159

60.681

91.243

0.554
  recA Streptococcus pyogenes NZ131

60.681

91.243

0.554
  recA Lactococcus lactis subsp. cremoris KW2

58.204

91.243

0.531