Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | K8P06_RS17105 | Genome accession | NZ_CP082868 |
| Coordinates | 3646422..3647468 (+) | Length | 348 a.a. |
| NCBI ID | WP_003419530.1 | Uniprot ID | A0AAX3GVV5 |
| Organism | Clostridioides difficile strain FDAARGOS_1469 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 3641632..3692244 | 3646422..3647468 | within | 0 |
Gene organization within MGE regions
Location: 3641632..3692244
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K8P06_RS17090 (K8P06_16955) | mnmH | 3643240..3644298 (+) | 1059 | WP_003419524.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| K8P06_RS17095 (K8P06_16960) | rimO | 3644292..3645626 (+) | 1335 | WP_003419527.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| K8P06_RS17100 (K8P06_16965) | pgsA | 3645613..3646155 (+) | 543 | WP_009905407.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| K8P06_RS17105 (K8P06_16970) | recA | 3646422..3647468 (+) | 1047 | WP_003419530.1 | recombinase RecA | Machinery gene |
| K8P06_RS17110 (K8P06_16975) | rny | 3647644..3649185 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| K8P06_RS17115 (K8P06_16980) | - | 3649495..3651831 (+) | 2337 | WP_022615961.1 | diguanylate cyclase | - |
| K8P06_RS17120 (K8P06_16985) | - | 3652637..3652735 (+) | 99 | Protein_3303 | transposase | - |
| K8P06_RS17125 (K8P06_16990) | tnpB | 3652737..3653855 (+) | 1119 | WP_196612436.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| K8P06_RS17130 (K8P06_16995) | - | 3654187..3655968 (+) | 1782 | WP_003419546.1 | UvrD-helicase domain-containing protein | - |
| K8P06_RS17135 (K8P06_17000) | lepB | 3656048..3656578 (-) | 531 | WP_009905409.1 | signal peptidase I | - |
| K8P06_RS17140 (K8P06_17005) | - | 3656618..3657442 (-) | 825 | WP_009905410.1 | undecaprenyl-diphosphate phosphatase | - |
| K8P06_RS17145 (K8P06_17010) | - | 3657699..3658610 (+) | 912 | WP_022615208.1 | tyrosine-type recombinase/integrase | - |
| K8P06_RS17150 (K8P06_17015) | purB | 3658749..3660194 (+) | 1446 | WP_003419557.1 | adenylosuccinate lyase | - |
| K8P06_RS17155 (K8P06_17020) | - | 3660495..3660947 (+) | 453 | WP_003419561.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| K8P06_RS17160 (K8P06_17025) | - | 3661166..3662362 (-) | 1197 | WP_022615962.1 | pyridoxal phosphate-dependent aminotransferase | - |
| K8P06_RS17165 (K8P06_17030) | galT | 3662747..3663697 (+) | 951 | WP_003419573.1 | galactose-1-phosphate uridylyltransferase | - |
| K8P06_RS17170 (K8P06_17035) | - | 3663818..3664570 (+) | 753 | WP_003419575.1 | exodeoxyribonuclease III | - |
| K8P06_RS17175 (K8P06_17040) | - | 3664662..3665438 (-) | 777 | WP_003419578.1 | 3'-5' exonuclease | - |
| K8P06_RS17180 (K8P06_17045) | - | 3665753..3667651 (+) | 1899 | WP_003419583.1 | glutamine synthetase | - |
| K8P06_RS17185 (K8P06_17050) | - | 3667779..3668900 (-) | 1122 | WP_003419591.1 | MGDG synthase family glycosyltransferase | - |
| K8P06_RS17190 (K8P06_17055) | - | 3669099..3669431 (+) | 333 | WP_009905416.1 | PadR family transcriptional regulator | - |
| K8P06_RS17195 (K8P06_17060) | - | 3669418..3670476 (+) | 1059 | WP_003419595.1 | DUF1700 domain-containing protein | - |
| K8P06_RS17200 (K8P06_17065) | - | 3670469..3671539 (+) | 1071 | WP_022615963.1 | DUF4097 family beta strand repeat-containing protein | - |
| K8P06_RS17205 (K8P06_17070) | - | 3671641..3672177 (+) | 537 | WP_003419598.1 | hypothetical protein | - |
| K8P06_RS17210 (K8P06_17075) | - | 3672297..3673004 (+) | 708 | WP_022615964.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| K8P06_RS17215 (K8P06_17080) | - | 3673006..3673725 (+) | 720 | WP_003419603.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| K8P06_RS17220 (K8P06_17085) | - | 3673727..3674497 (+) | 771 | WP_003419609.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| K8P06_RS17225 (K8P06_17090) | - | 3674631..3676022 (+) | 1392 | WP_029158131.1 | sensor histidine kinase | - |
| K8P06_RS17230 (K8P06_17095) | - | 3676098..3676919 (-) | 822 | WP_003419615.1 | pyridoxamine kinase | - |
| K8P06_RS17235 (K8P06_17100) | - | 3677170..3678324 (+) | 1155 | WP_009905420.1 | amidase domain-containing protein | - |
| K8P06_RS17240 (K8P06_17105) | - | 3678507..3678707 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| K8P06_RS17245 (K8P06_17110) | - | 3679128..3679556 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| K8P06_RS17250 (K8P06_17115) | - | 3679699..3680454 (-) | 756 | WP_022615965.1 | peptidylprolyl isomerase | - |
| K8P06_RS17255 (K8P06_17120) | - | 3681155..3681661 (-) | 507 | WP_003419636.1 | ImmA/IrrE family metallo-endopeptidase | - |
| K8P06_RS17260 (K8P06_17125) | - | 3681743..3682063 (-) | 321 | WP_003419639.1 | XRE family transcriptional regulator | - |
| K8P06_RS17265 (K8P06_17130) | - | 3682232..3682429 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| K8P06_RS17270 (K8P06_17135) | - | 3682533..3682973 (+) | 441 | WP_003419643.1 | hypothetical protein | - |
| K8P06_RS17275 (K8P06_17140) | - | 3683222..3683665 (+) | 444 | WP_003419644.1 | phage tail terminator family protein | - |
| K8P06_RS17280 (K8P06_17145) | - | 3683670..3684734 (+) | 1065 | WP_022615966.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| K8P06_RS17285 (K8P06_17150) | - | 3684748..3685176 (+) | 429 | WP_003419646.1 | phage tail tube protein | - |
| K8P06_RS17290 (K8P06_17155) | - | 3685290..3685736 (+) | 447 | WP_003419647.1 | phage tail assembly chaperone | - |
| K8P06_RS17295 (K8P06_17160) | - | 3685763..3685930 (+) | 168 | WP_003419648.1 | hypothetical protein | - |
| K8P06_RS17300 (K8P06_17165) | - | 3685930..3688383 (+) | 2454 | WP_003419649.1 | hypothetical protein | - |
| K8P06_RS17305 (K8P06_17170) | - | 3688383..3688805 (+) | 423 | WP_003419651.1 | phage baseplate protein | - |
| K8P06_RS19505 (K8P06_17175) | - | 3688991..3690615 (+) | 1625 | Protein_3341 | XkdQ/YqbQ family protein | - |
| K8P06_RS17320 (K8P06_17180) | - | 3690631..3690957 (+) | 327 | WP_003419655.1 | DUF2577 family protein | - |
| K8P06_RS17325 (K8P06_17185) | - | 3690957..3691385 (+) | 429 | WP_003419656.1 | DUF2634 domain-containing protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37387.68 Da Isoelectric Point: 4.8236
>NTDB_id=603251 K8P06_RS17105 WP_003419530.1 3646422..3647468(+) (recA) [Clostridioides difficile strain FDAARGOS_1469]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTNEI
DEKVRAFYNLNEEHEEAGNSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTNEI
DEKVRAFYNLNEEHEEAGNSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=603251 K8P06_RS17105 WP_003419530.1 3646422..3647468(+) (recA) [Clostridioides difficile strain FDAARGOS_1469]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGATATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCACTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATACGCAAAAGC
TTTGGGCGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGACTCTCACGTAGGGTTACAAGCTAGACTTATGTCGCAAGCTCTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCATTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGAGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTCGTTAAAAATAAAGTAGCACCTCCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTCTAGATATAGCTGCTGATGTAGATATAGTAAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTAATGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAAGCAGGTAATTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGATATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCACTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATACGCAAAAGC
TTTGGGCGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGACTCTCACGTAGGGTTACAAGCTAGACTTATGTCGCAAGCTCTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCATTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGAGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTCGTTAAAAATAAAGTAGCACCTCCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTCTAGATATAGCTGCTGATGTAGATATAGTAAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTAATGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAAGCAGGTAATTCAGTATCAAAAGAAATTGTAGA
AGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.