Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   K8F61_RS06810 Genome accession   NZ_CP082781
Coordinates   1394113..1395165 (-) Length   350 a.a.
NCBI ID   WP_067243572.1    Uniprot ID   -
Organism   Microbacterium resistens strain MZT7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1389113..1400165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8F61_RS06780 (K8F61_06795) - 1389225..1389605 (-) 381 WP_067243646.1 helix-turn-helix domain-containing protein -
  K8F61_RS06785 (K8F61_06800) - 1389671..1390210 (-) 540 WP_067243569.1 dihydrofolate reductase family protein -
  K8F61_RS06790 (K8F61_06805) - 1390254..1390697 (-) 444 WP_231821129.1 GNAT family acetyltransferase -
  K8F61_RS06795 (K8F61_06810) miaA 1390694..1391671 (-) 978 WP_231821130.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  K8F61_RS06800 (K8F61_06815) miaB 1391668..1393215 (-) 1548 WP_231821131.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  K8F61_RS06805 (K8F61_06820) - 1393322..1394062 (-) 741 WP_231821132.1 regulatory protein RecX -
  K8F61_RS06810 (K8F61_06825) recA 1394113..1395165 (-) 1053 WP_067243572.1 recombinase RecA Machinery gene
  K8F61_RS06815 (K8F61_06830) - 1395438..1395662 (-) 225 WP_067243652.1 DUF3046 domain-containing protein -
  K8F61_RS06820 (K8F61_06835) - 1395703..1396011 (-) 309 WP_025103227.1 helix-turn-helix domain-containing protein -
  K8F61_RS06825 (K8F61_06840) - 1396156..1396644 (-) 489 WP_231821133.1 CinA family protein -
  K8F61_RS06830 (K8F61_06845) pgsA 1396641..1397225 (-) 585 WP_231821134.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  K8F61_RS06835 (K8F61_06850) - 1397225..1400011 (-) 2787 WP_067243576.1 FtsK/SpoIIIE family DNA translocase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37219.43 Da        Isoelectric Point: 5.8149

>NTDB_id=602173 K8F61_RS06810 WP_067243572.1 1394113..1395165(-) (recA) [Microbacterium resistens strain MZT7]
MPSPADRERALESALAQIDKQFGKGSVMRLGSDERAPVEVIPTGSIALDVALGVGGLPRGRIIEIYGPESSGKTTLTLHA
IANVQRAGGIAAFVDAEHALDPEYAKKLGVDIDQLLVSQPDTGEQALEIADMLIRSGAIDLVVIDSVAALVPRAEIEGEM
GDSHVGLQARLMSQALRKLTGGLNQTKTTAIFINQLREKIGVFFGSPETTAGGKALKFYASVRLDIRRIETLKDGSEAVG
NRTRVKVVKNKMAPPFKQAEFDILYGTGISREGSLIDFGVDHGIVKKSGAWYTYDGDQLGQGKENARNFLINNPDIAAAI
ETQIKQKLGVGGAAAPEAAPADELAQRRPA

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=602173 K8F61_RS06810 WP_067243572.1 1394113..1395165(-) (recA) [Microbacterium resistens strain MZT7]
ATGCCATCACCCGCAGACCGCGAACGGGCCCTCGAGTCGGCCCTCGCTCAGATCGACAAGCAGTTCGGCAAGGGTTCGGT
CATGCGACTGGGCAGCGACGAGCGTGCTCCCGTCGAGGTCATCCCGACCGGCTCCATCGCCCTCGACGTCGCCCTCGGCG
TCGGTGGACTGCCGCGCGGCCGCATCATCGAGATCTACGGACCGGAGTCCTCCGGTAAGACCACTCTGACGCTGCACGCG
ATCGCCAACGTCCAGCGCGCCGGAGGCATCGCGGCGTTCGTCGATGCGGAGCACGCGCTCGACCCCGAGTACGCCAAGAA
GCTCGGCGTCGACATCGACCAGCTGCTCGTCTCCCAGCCCGACACGGGCGAGCAGGCGCTGGAGATCGCCGACATGCTGA
TCCGCTCCGGCGCGATCGACCTCGTCGTCATCGACTCGGTCGCGGCCCTGGTTCCCCGGGCCGAGATCGAGGGCGAGATG
GGCGACTCCCACGTGGGTCTGCAGGCTCGCCTGATGTCGCAGGCGCTGCGCAAGCTCACCGGTGGCCTGAACCAGACGAA
GACCACGGCGATCTTCATCAACCAGCTCCGCGAGAAGATCGGCGTCTTCTTCGGCTCGCCGGAGACCACCGCGGGTGGTA
AGGCGCTGAAGTTCTACGCCTCGGTACGTCTGGACATCCGCCGGATCGAGACGCTGAAGGACGGCAGCGAGGCGGTCGGG
AACCGGACCCGCGTGAAGGTCGTGAAGAACAAGATGGCCCCGCCGTTCAAGCAGGCCGAGTTCGACATCCTGTACGGCAC
GGGCATCTCGCGCGAGGGCAGCCTCATCGATTTCGGGGTCGACCACGGCATCGTGAAGAAGTCCGGGGCCTGGTACACGT
ACGACGGCGATCAGCTCGGGCAGGGCAAGGAGAACGCCCGGAACTTCCTGATCAACAACCCGGACATCGCCGCCGCGATC
GAGACGCAGATCAAGCAGAAGCTGGGCGTCGGCGGGGCAGCGGCTCCGGAGGCCGCGCCCGCGGACGAGCTGGCGCAGCG
GCGTCCCGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

66.471

97.143

0.646
  recA Acinetobacter baumannii D1279779

65.97

95.714

0.631
  recA Acinetobacter baylyi ADP1

65.089

96.571

0.629
  recA Neisseria gonorrhoeae MS11

67.178

93.143

0.626
  recA Neisseria gonorrhoeae strain FA1090

67.178

93.143

0.626
  recA Neisseria gonorrhoeae MS11

67.178

93.143

0.626
  recA Bacillus subtilis subsp. subtilis str. 168

66.871

93.143

0.623
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.563

92.286

0.614
  recA Vibrio cholerae strain A1552

66.563

92.286

0.614
  recA Ralstonia pseudosolanacearum GMI1000

68.371

89.429

0.611
  recA Streptococcus mitis NCTC 12261

60.983

98.857

0.603
  recA Streptococcus mitis SK321

60.983

98.857

0.603
  recA Streptococcus pneumoniae Rx1

63.333

94.286

0.597
  recA Streptococcus pneumoniae D39

63.333

94.286

0.597
  recA Streptococcus pneumoniae R6

63.333

94.286

0.597
  recA Streptococcus pneumoniae TIGR4

63.333

94.286

0.597
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.415

93.714

0.594
  recA Lactococcus lactis subsp. cremoris KW2

63.03

94.286

0.594
  recA Glaesserella parasuis strain SC1401

61.062

96.857

0.591
  recA Helicobacter pylori 26695

61.128

96.286

0.589
  recA Helicobacter pylori strain NCTC11637

61.128

96.286

0.589
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.006

94

0.583
  recA Streptococcus mutans UA159

62.006

94

0.583
  recA Latilactobacillus sakei subsp. sakei 23K

62.769

92.857

0.583
  recA Streptococcus pyogenes NZ131

61.585

93.714

0.577
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.375

91.429

0.543