Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   K7G97_RS05575 Genome accession   NZ_CP082333
Coordinates   1081407..1082450 (+) Length   347 a.a.
NCBI ID   WP_195865458.1    Uniprot ID   -
Organism   Exiguobacterium acetylicum strain EYLC1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1076407..1087450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7G97_RS05550 (K7G97_05550) ymfI 1076841..1077545 (+) 705 WP_223041561.1 elongation factor P 5-aminopentanone reductase -
  K7G97_RS05555 (K7G97_05555) - 1077640..1078422 (+) 783 WP_023467698.1 DUF3388 domain-containing protein -
  K7G97_RS05560 (K7G97_05560) - 1078432..1079349 (+) 918 WP_244290109.1 RodZ family helix-turn-helix domain-containing protein -
  K7G97_RS05565 (K7G97_05565) pgsA 1079413..1079991 (+) 579 WP_023467700.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  K7G97_RS05570 (K7G97_05570) - 1080063..1081295 (+) 1233 WP_223041562.1 competence/damage-inducible protein A -
  K7G97_RS05575 (K7G97_05575) recA 1081407..1082450 (+) 1044 WP_195865458.1 recombinase RecA Machinery gene
  K7G97_RS05580 (K7G97_05580) rny 1082644..1084206 (+) 1563 WP_023467703.1 ribonuclease Y -
  K7G97_RS05585 (K7G97_05585) - 1084256..1085050 (+) 795 WP_023467704.1 TIGR00282 family metallophosphoesterase -
  K7G97_RS05590 (K7G97_05590) - 1085080..1085340 (+) 261 WP_023467705.1 stage V sporulation protein S -
  K7G97_RS05595 (K7G97_05595) - 1085530..1087278 (+) 1749 WP_035398188.1 2-oxoacid:acceptor oxidoreductase subunit alpha -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37575.75 Da        Isoelectric Point: 5.0854

>NTDB_id=601549 K7G97_RS05575 WP_195865458.1 1081407..1082450(+) (recA) [Exiguobacterium acetylicum strain EYLC1]
MSDRKAALEMALRQIEKQFGKGSIMKLGENADQKVSVISSGSITLDIALGAGGYPRGRVIEVYGPESSGKTTVALHAIAE
VQKQGGQAAFIDAEHALDPAYANKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDILVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGATNKSKTIVIFINQIREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEALKNGTDVVGNKT
KIKVVKNKIAPPFKQAEVDIMYGQGISKVGELIDIGTDLDIVQKSGAWYSYNSERLGQGRENAKQYMVEHPEVAAEVERL
IREHHGLVDREEPVDFEAEQPEDLFAE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=601549 K7G97_RS05575 WP_195865458.1 1081407..1082450(+) (recA) [Exiguobacterium acetylicum strain EYLC1]
GTGAGTGATCGTAAAGCAGCACTTGAGATGGCGTTACGCCAGATAGAGAAACAGTTCGGTAAAGGTTCTATCATGAAACT
CGGAGAAAATGCGGATCAGAAGGTATCAGTAATCTCTTCTGGATCGATTACATTAGATATTGCCCTAGGTGCAGGTGGAT
ACCCACGTGGACGGGTCATCGAAGTATACGGACCTGAATCGTCAGGTAAAACAACGGTTGCGCTTCATGCAATCGCAGAA
GTTCAAAAACAAGGCGGACAAGCAGCATTCATCGATGCGGAGCACGCGCTTGATCCAGCATATGCAAACAAACTTGGTGT
CAACATCGATGAACTCCTCTTGTCACAACCGGATACTGGGGAACAGGCACTTGAAATCGCGGAAGCACTCGTTCGTTCTG
GTGCGGTCGATATTCTTGTCGTCGACTCTGTTGCGGCACTCGTACCAAAAGCAGAGATCGAGGGTGAGATGGGTGACTCA
CACGTTGGTCTTCAAGCACGTTTGATGAGCCAAGCGCTTCGTAAGTTGTCTGGTGCAACGAATAAATCGAAGACGATCGT
CATTTTCATCAACCAAATCCGTGAAAAAATCGGTGTCATGTTCGGTAACCCGGAAACAACTCCAGGTGGTCGCGCACTCA
AATTCTACTCGTCTGTACGTTTAGAAGTGCGTCGTGCAGAAGCGTTGAAAAACGGTACGGACGTCGTCGGTAACAAAACG
AAGATTAAAGTCGTCAAAAACAAGATCGCACCTCCGTTCAAACAAGCGGAAGTTGATATCATGTACGGTCAAGGGATTTC
GAAGGTCGGTGAGTTGATCGACATCGGAACAGACCTCGATATCGTTCAAAAGAGTGGTGCATGGTACTCGTACAACTCAG
AGCGTCTCGGTCAAGGACGTGAGAACGCGAAGCAATACATGGTCGAGCATCCGGAAGTTGCAGCAGAGGTCGAACGTTTG
ATTCGTGAACACCACGGTCTCGTCGATCGCGAAGAGCCGGTTGATTTCGAAGCAGAACAACCAGAAGATCTATTTGCTGA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

83.18

94.236

0.784
  recA Latilactobacillus sakei subsp. sakei 23K

74.242

95.101

0.706
  recA Streptococcus pneumoniae D39

68.497

99.712

0.683
  recA Streptococcus pneumoniae R6

68.497

99.712

0.683
  recA Streptococcus pneumoniae TIGR4

68.497

99.712

0.683
  recA Streptococcus pneumoniae Rx1

68.497

99.712

0.683
  recA Streptococcus mitis SK321

70.149

96.542

0.677
  recA Streptococcus mitis NCTC 12261

69.552

96.542

0.671
  recA Streptococcus pyogenes NZ131

69.817

94.524

0.66
  recA Streptococcus mutans UA159

67.964

96.254

0.654
  recA Lactococcus lactis subsp. cremoris KW2

67.164

96.542

0.648
  recA Acinetobacter baumannii D1279779

62.899

99.424

0.625
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.978

92.507

0.62
  recA Vibrio cholerae strain A1552

66.978

92.507

0.62
  recA Neisseria gonorrhoeae MS11

65.046

94.813

0.617
  recA Neisseria gonorrhoeae MS11

65.046

94.813

0.617
  recA Neisseria gonorrhoeae strain FA1090

65.046

94.813

0.617
  recA Acinetobacter baylyi ADP1

64.308

93.66

0.602
  recA Ralstonia pseudosolanacearum GMI1000

66.773

90.202

0.602
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.609

94.236

0.599
  recA Pseudomonas stutzeri DSM 10701

64.062

92.219

0.591
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.27

93.948

0.585
  recA Helicobacter pylori strain NCTC11637

61.846

93.66

0.579
  recA Glaesserella parasuis strain SC1401

62.696

91.931

0.576
  recA Helicobacter pylori 26695

61.538

93.66

0.576
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.342

91.066

0.568