Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   K6I41_RS07530 Genome accession   NZ_CP082274
Coordinates   1610713..1611759 (-) Length   348 a.a.
NCBI ID   WP_250375530.1    Uniprot ID   -
Organism   Acinetobacter sp. AS23     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1605713..1616759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6I41_RS07495 (K6I41_07455) - 1605969..1606469 (+) 501 WP_250375528.1 OmpH family outer membrane protein -
  K6I41_RS07500 (K6I41_07460) lpxD 1606474..1607544 (+) 1071 WP_151767440.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -
  K6I41_RS07505 (K6I41_07465) fabZ 1607551..1608036 (+) 486 WP_003652176.1 3-hydroxyacyl-ACP dehydratase FabZ -
  K6I41_RS07510 (K6I41_07470) lpxA 1608033..1608821 (+) 789 WP_003652175.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -
  K6I41_RS07515 (K6I41_07475) - 1608879..1609742 (-) 864 WP_250375529.1 YbgF trimerization domain-containing protein -
  K6I41_RS07525 (K6I41_07485) - 1610171..1610653 (-) 483 WP_005306262.1 regulatory protein RecX -
  K6I41_RS07530 (K6I41_07490) recA 1610713..1611759 (-) 1047 WP_250375530.1 recombinase RecA Machinery gene
  K6I41_RS07535 (K6I41_07495) - 1611905..1612333 (-) 429 WP_005306259.1 S4 domain-containing protein -
  K6I41_RS07540 (K6I41_07500) - 1612317..1613003 (-) 687 WP_250375531.1 HAD-IA family hydrolase -
  K6I41_RS07545 (K6I41_07505) - 1613394..1613687 (+) 294 WP_004791883.1 hypothetical protein -
  K6I41_RS07550 (K6I41_07510) - 1613669..1614208 (-) 540 WP_250375532.1 GNAT family N-acetyltransferase -
  K6I41_RS07555 (K6I41_07515) gigD 1614238..1614687 (-) 450 WP_004791887.1 Lrp/AsnC family transcriptional regulator GigD -
  K6I41_RS07560 (K6I41_07520) kynU 1614835..1616085 (+) 1251 WP_250375533.1 kynureninase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37782.10 Da        Isoelectric Point: 4.9237

>NTDB_id=600759 K6I41_RS07530 WP_250375530.1 1610713..1611759(-) (recA) [Acinetobacter sp. AS23]
MDENKSKALQAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAIA
QCQKTGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDLIVVDSVAALTPKAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIVGSE
TRVKVVKNKMAPPFREAIFQILYGKGTNQLGELVDLAVQQDIVQKAGAWYSYQGNKIGQGKNNVIRHFEENPQMAGEIER
NIREQLLTTGTNTAQVEDEDEVDLLLES

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=600759 K6I41_RS07530 WP_250375530.1 1610713..1611759(-) (recA) [Acinetobacter sp. AS23]
ATGGATGAGAATAAAAGCAAAGCATTACAAGCCGCGCTAAGTCAAATTGAGAAACAATTTGGCAAAAATACGGTGATGCG
TCTCGGTGACAACACTGTTCAAGCTGTTGAAGCTGTATCTACAGGCTCTTTGACTTTAGATATTGCATTGGGGATTGGCG
GTTTACCAAAAGGTCGTATTGTAGAGATTTATGGTCCAGAATCTTCTGGTAAAACCACAATGACTCTACAAGCAATTGCA
CAATGTCAAAAAACTGGTGGTACTTGTGCCTTTATCGATGCAGAGCATGCATTAGATCCACAATATGCACGTAAGCTTGG
TGTAGACATTGATAATCTGCTTGTATCGCAACCTGATAACGGTGAACAAGCACTCGAAATTGCAGATATGCTCGTTCGTT
CTGGTGCAATTGACTTAATCGTTGTCGACTCAGTCGCTGCACTTACTCCTAAAGCAGAAATTGAAGGTGAGATGGGTGAC
TCTCATATGGGCTTGCAAGCTCGTCTAATGAGTCAGGCACTTCGTAAAATTACGGGTAATGCTAAACGTTCAAACTGTAT
GGTTATCTTCATTAACCAGATCCGTATGAAGATTGGAGTAATGTTTGGTAGTCCAGAAACCACAACTGGTGGTAACGCAT
TGAAGTTCTACGCTTCTGTACGTTTAGATATCCGCCGTATTGGCCAAGTAAAAGAAGGCGATGAAATCGTCGGCTCTGAA
ACTCGAGTTAAAGTGGTTAAAAACAAAATGGCTCCTCCTTTCAGAGAGGCTATTTTCCAAATCCTATATGGTAAAGGCAC
AAACCAGCTAGGCGAACTTGTAGATTTAGCTGTACAACAAGATATCGTACAAAAAGCAGGCGCTTGGTATTCATATCAAG
GTAATAAAATTGGTCAAGGTAAGAACAATGTTATTCGCCACTTTGAAGAAAACCCTCAAATGGCTGGGGAAATTGAACGT
AACATCCGTGAACAGTTATTAACAACTGGTACTAATACTGCTCAAGTTGAAGATGAAGATGAAGTTGATCTTCTACTAGA
ATCTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

96.275

100

0.966
  recA Acinetobacter baylyi ADP1

92.507

99.713

0.922
  recA Pseudomonas stutzeri DSM 10701

76.276

95.69

0.73
  recA Vibrio cholerae strain A1552

73.7

93.966

0.693
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.7

93.966

0.693
  recA Glaesserella parasuis strain SC1401

68.915

97.989

0.675
  recA Ralstonia pseudosolanacearum GMI1000

70.122

94.253

0.661
  recA Neisseria gonorrhoeae MS11

67.656

96.839

0.655
  recA Neisseria gonorrhoeae MS11

67.656

96.839

0.655
  recA Neisseria gonorrhoeae strain FA1090

67.656

96.839

0.655
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.988

98.276

0.609
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.444

95.115

0.603
  recA Helicobacter pylori strain NCTC11637

63.914

93.966

0.601
  recA Helicobacter pylori 26695

63.609

93.966

0.598
  recA Streptococcus mutans UA159

59.026

100

0.592
  recA Streptococcus mitis SK321

59.475

98.563

0.586
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.27

93.678

0.583
  recA Streptococcus pneumoniae R6

58.721

98.851

0.58
  recA Streptococcus pneumoniae Rx1

58.721

98.851

0.58
  recA Streptococcus pneumoniae D39

58.721

98.851

0.58
  recA Streptococcus pneumoniae TIGR4

58.721

98.851

0.58
  recA Streptococcus mitis NCTC 12261

59.821

96.552

0.578
  recA Streptococcus pyogenes NZ131

61.231

93.391

0.572
  recA Bacillus subtilis subsp. subtilis str. 168

61.801

92.529

0.572
  recA Latilactobacillus sakei subsp. sakei 23K

58.567

92.241

0.54
  recA Lactococcus lactis subsp. cremoris KW2

58.204

92.816

0.54