Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   K4042_RS15945 Genome accession   NZ_CP082269
Coordinates   3276372..3277436 (-) Length   354 a.a.
NCBI ID   WP_144817845.1    Uniprot ID   -
Organism   Enterobacter sp. C2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3271372..3282436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K4042_RS15930 csrA 3272615..3272800 (-) 186 WP_000906486.1 carbon storage regulator CsrA -
  K4042_RS15935 alaS 3273043..3275670 (-) 2628 WP_222888627.1 alanine--tRNA ligase -
  K4042_RS15940 recX 3275816..3276301 (-) 486 WP_144817846.1 recombination regulator RecX -
  K4042_RS15945 recA 3276372..3277436 (-) 1065 WP_144817845.1 recombinase RecA Machinery gene
  K4042_RS15950 pncC 3277526..3278023 (-) 498 WP_222888628.1 nicotinamide-nucleotide amidase -
  K4042_RS15955 - 3278160..3279038 (-) 879 WP_222888629.1 metal ABC transporter substrate-binding protein -
  K4042_RS15960 - 3279057..3279917 (-) 861 WP_222888630.1 metal ABC transporter permease -
  K4042_RS15965 - 3279914..3280564 (-) 651 WP_222888631.1 ATP-binding cassette domain-containing protein -
  K4042_RS15970 mltB 3280807..3281889 (-) 1083 WP_042387649.1 lytic murein transglycosylase B -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38185.63 Da        Isoelectric Point: 4.8741

>NTDB_id=600649 K4042_RS15945 WP_144817845.1 3276372..3277436(-) (recA) [Enterobacter sp. C2]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRTMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQRQGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVLVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGKANATTWLKENPATAKEI
ETKIREILLTNPDTKPDFTVDDNDVNAKETNEDF

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=600649 K4042_RS15945 WP_144817845.1 3276372..3277436(-) (recA) [Enterobacter sp. C2]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATCGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTACTATGGACGTAGAAACGATCTCCACGGGTTCGCTTTCACTGGACATCGCCCTCGGTG
CGGGTGGCCTGCCAATGGGCCGTATCGTAGAGATCTACGGGCCGGAGTCCTCAGGTAAAACGACCCTGACACTGCAGGTT
ATTGCTGCTGCCCAGCGTCAGGGTAAAACCTGTGCCTTTATCGATGCAGAGCACGCGCTTGACCCTGTGTACGCGCGCAA
GCTGGGCGTTGATATCGACAACCTGCTCTGCTCCCAGCCGGATACCGGTGAGCAGGCGCTTGAGATCTGTGACGCGCTGG
CGCGCTCCGGTGCGGTTGACGTGCTGGTGGTTGACTCCGTTGCGGCACTGACGCCGAAAGCCGAGATCGAAGGCGAGATC
GGTGACTCTCACATGGGCCTCGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCGGGTAACCTGAAGCAGTCCAA
CACCCTGCTGATCTTCATCAACCAGATCCGTATGAAGATTGGTGTGATGTTCGGTAACCCGGAAACCACCACCGGCGGTA
ACGCGCTGAAATTCTACGCCTCCGTGCGTCTCGACATCCGCCGTATCGGCGCGGTGAAAGAGGGCGATAACGTGGTCGGT
AGCGAAACCCGCGTGAAAGTGGTGAAAAACAAGATCGCTGCGCCGTTCAAACAGGCTGAGTTCCAGATCCTCTACGGCGA
AGGTATCAACTTCTACGGCGAGCTGGTTGACCTGGGCGTGAAAGAGAAGCTGATCGAAAAAGCGGGCGCATGGTATAGCT
ACAACGGTGAGAAGATCGGTCAGGGTAAAGCGAATGCGACCACCTGGCTGAAAGAGAACCCGGCTACCGCGAAAGAGATC
GAAACGAAGATCCGTGAAATTCTGCTCACGAACCCGGACACCAAACCGGACTTTACGGTTGACGACAACGACGTCAATGC
AAAAGAGACCAACGAAGATTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

83.988

93.503

0.785
  recA Vibrio cholerae O1 biovar El Tor strain E7946

83.988

93.503

0.785
  recA Pseudomonas stutzeri DSM 10701

73.314

96.328

0.706
  recA Acinetobacter baumannii D1279779

75

92.655

0.695
  recA Acinetobacter baylyi ADP1

74.695

92.655

0.692
  recA Glaesserella parasuis strain SC1401

70.294

96.045

0.675
  recA Neisseria gonorrhoeae MS11

69.753

91.525

0.638
  recA Neisseria gonorrhoeae MS11

69.753

91.525

0.638
  recA Neisseria gonorrhoeae strain FA1090

69.753

91.525

0.638
  recA Ralstonia pseudosolanacearum GMI1000

70.159

88.983

0.624
  recA Helicobacter pylori strain NCTC11637

61.721

95.198

0.588
  recA Helicobacter pylori 26695

61.424

95.198

0.585
  recA Bacillus subtilis subsp. subtilis str. 168

63.551

90.678

0.576
  recA Lactococcus lactis subsp. cremoris KW2

62.229

91.243

0.568
  recA Streptococcus mitis SK321

62.229

91.243

0.568
  recA Streptococcus mitis NCTC 12261

62.229

91.243

0.568
  recA Streptococcus mutans UA159

61.846

91.808

0.568
  recA Streptococcus pyogenes NZ131

61.846

91.808

0.568
  recA Streptococcus pneumoniae TIGR4

61.92

91.243

0.565
  recA Streptococcus pneumoniae D39

61.92

91.243

0.565
  recA Streptococcus pneumoniae Rx1

61.92

91.243

0.565
  recA Streptococcus pneumoniae R6

61.92

91.243

0.565
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.241

93.785

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

61.538

91.808

0.565
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.42

91.525

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.748

90.678

0.551