Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   K6751_RS22100 Genome accession   NZ_CP082244
Coordinates   4813251..4814303 (-) Length   350 a.a.
NCBI ID   WP_044414285.1    Uniprot ID   -
Organism   Metapseudomonas otitidis strain CSMC7.1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4808251..4819303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6751_RS22080 (K6751_22080) - 4808848..4810548 (-) 1701 WP_222900084.1 OmpP1/FadL family transporter -
  K6751_RS22085 (K6751_22085) - 4811027..4811443 (+) 417 WP_044414279.1 quorum-sensing-regulated virulence factor family protein -
  K6751_RS22090 (K6751_22090) - 4811648..4812721 (+) 1074 WP_044414282.1 LOG family protein -
  K6751_RS22095 (K6751_22095) recX 4812782..4813246 (-) 465 WP_074971922.1 recombination regulator RecX -
  K6751_RS22100 (K6751_22100) recA 4813251..4814303 (-) 1053 WP_044414285.1 recombinase RecA Machinery gene
  K6751_RS22105 (K6751_22105) - 4814390..4814902 (-) 513 WP_222900085.1 CinA family protein -
  K6751_RS22110 (K6751_22110) mutS 4815028..4817607 (+) 2580 WP_222900086.1 DNA mismatch repair protein MutS -
  K6751_RS22115 (K6751_22115) fdxA 4817745..4818068 (+) 324 WP_044414294.1 ferredoxin FdxA -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37512.83 Da        Isoelectric Point: 5.3304

>NTDB_id=600512 K6751_RS22100 WP_044414285.1 4813251..4814303(-) (recA) [Metapseudomonas otitidis strain CSMC7.1]
MDENKKRALAAALGQIEKQFGKGAVMRMGDHERQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQRMGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
SHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKEGEEVVGSE
TRVKVVKNKVSPPFRQAEFQILYGKGIYRSGEVIDLGVQQGILEKSGAWYSYQGNKIGQGKANAAKYLEDNPETGKAIEK
LIREQLLNRNNGKQDFVPTAEEAAEADADA

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=600512 K6751_RS22100 WP_044414285.1 4813251..4814303(-) (recA) [Metapseudomonas otitidis strain CSMC7.1]
ATGGACGAGAACAAGAAGCGTGCTTTGGCGGCTGCCCTGGGCCAGATCGAGAAGCAGTTCGGCAAAGGCGCGGTCATGCG
CATGGGCGACCATGAGCGCCAGGCCATCCCGGCCATTTCCACCGGCTCCCTGGGGCTGGACATCGCCCTCGGCATCGGCG
GCCTGCCCAAGGGGCGTATCGTCGAGATCTACGGCCCGGAATCCTCGGGCAAGACCACCCTGACCCTGTCCGTGATCGCC
GAAGCCCAGCGCATGGGGGCCACCTGCGCCTTCGTCGACGCCGAGCACGCGCTGGACCCGGACTACGCCGGCAAACTGGG
CGTCAATGTCGACGACCTGCTGGTTTCCCAGCCCGACACCGGCGAGCAGGCCCTGGAAATCACCGACATGCTGGTGCGTT
CCAACGCGGTCGACGTGATCATCGTCGACTCCGTTGCCGCCCTGGTGCCCAAGGCCGAGATCGAAGGCGAGATGGGCGAC
TCCCACGTCGGTCTCCAGGCCCGCCTGATGTCCCAGGCCCTGCGCAAGATCACCGGCAACATCAAGAACGCCAACTGCCT
GGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTCATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TCAAGTTCTACGCCTCCGTACGCCTGGACATCCGCCGCATCGGCGCGGTGAAGGAAGGCGAGGAAGTAGTGGGCAGCGAG
ACCCGCGTCAAGGTCGTCAAGAACAAGGTTTCCCCGCCGTTCCGCCAGGCCGAGTTCCAGATCCTCTACGGCAAGGGCAT
CTACCGCAGCGGCGAAGTCATCGACCTCGGCGTGCAGCAGGGCATCCTCGAGAAGTCCGGCGCCTGGTACAGCTACCAGG
GCAACAAGATCGGCCAGGGCAAGGCCAATGCCGCCAAGTACCTCGAGGACAACCCGGAAACCGGCAAGGCCATCGAGAAG
CTGATCCGCGAGCAATTGCTGAACCGCAACAACGGCAAGCAGGACTTCGTCCCCACCGCCGAAGAAGCCGCTGAAGCCGA
CGCTGACGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

89.337

99.143

0.886
  recA Acinetobacter baylyi ADP1

77.204

94

0.726
  recA Acinetobacter baumannii D1279779

77.064

93.429

0.72
  recA Vibrio cholerae strain A1552

75.529

94.571

0.714
  recA Vibrio cholerae O1 biovar El Tor strain E7946

75.529

94.571

0.714
  recA Glaesserella parasuis strain SC1401

72.34

94

0.68
  recA Neisseria gonorrhoeae MS11

71.296

92.571

0.66
  recA Neisseria gonorrhoeae MS11

71.296

92.571

0.66
  recA Neisseria gonorrhoeae strain FA1090

71.296

92.571

0.66
  recA Ralstonia pseudosolanacearum GMI1000

73.633

88.857

0.654
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.526

93.429

0.603
  recA Helicobacter pylori strain NCTC11637

60.694

98.857

0.6
  recA Helicobacter pylori 26695

60.116

98.857

0.594
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.677

95.429

0.589
  recA Bacillus subtilis subsp. subtilis str. 168

61.702

94

0.58
  recA Streptococcus mitis NCTC 12261

56.322

99.429

0.56
  recA Streptococcus mutans UA159

58.507

95.714

0.56
  recA Latilactobacillus sakei subsp. sakei 23K

57.353

97.143

0.557
  recA Streptococcus mitis SK321

58.589

93.143

0.546
  recA Streptococcus pneumoniae Rx1

58.282

93.143

0.543
  recA Streptococcus pneumoniae D39

58.282

93.143

0.543
  recA Streptococcus pneumoniae R6

58.282

93.143

0.543
  recA Streptococcus pneumoniae TIGR4

58.282

93.143

0.543
  recA Streptococcus pyogenes NZ131

58.154

92.857

0.54
  recA Lactococcus lactis subsp. cremoris KW2

56.966

92.286

0.526
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.135

93.143

0.523