Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   L897_RS08725 Genome accession   NC_021807
Coordinates   1746997..1748133 (-) Length   378 a.a.
NCBI ID   WP_020837841.1    Uniprot ID   -
Organism   Streptococcus pyogenes HSC5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1741997..1753133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L897_RS08700 (L897_08920) - 1743219..1744778 (-) 1560 WP_020837839.1 membrane protein -
  L897_RS08705 (L897_08930) - 1745191..1745496 (-) 306 WP_002982199.1 DUF1292 domain-containing protein -
  L897_RS08710 (L897_08935) ruvX 1745508..1745927 (-) 420 WP_002982196.1 Holliday junction resolvase RuvX -
  L897_RS08715 (L897_08940) - 1745924..1746193 (-) 270 WP_002982194.1 IreB family regulatory phosphoprotein -
  L897_RS08720 (L897_08945) spx 1746308..1746706 (-) 399 WP_002982188.1 transcriptional regulator Spx -
  L897_RS08725 (L897_08950) recA 1746997..1748133 (-) 1137 WP_020837841.1 recombinase RecA Machinery gene
  L897_RS08730 (L897_08955) cinA 1748222..1749493 (-) 1272 WP_002992182.1 competence/damage-inducible protein A Machinery gene
  L897_RS08735 (L897_08960) - 1749562..1750122 (-) 561 WP_002992183.1 DNA-3-methyladenine glycosylase I -
  L897_RS08740 (L897_08965) ruvA 1750132..1750728 (-) 597 WP_002992186.1 Holliday junction branch migration protein RuvA -
  L897_RS08745 (L897_08970) - 1750730..1751950 (-) 1221 WP_002992187.1 MFS transporter -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 40630.29 Da        Isoelectric Point: 5.0475

>NTDB_id=59952 L897_RS08725 WP_020837841.1 1746997..1748133(-) (recA) [Streptococcus pyogenes HSC5]
MAKKLKKNEEITKKFGDERRKALDDALKNIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDKLLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
TTQIKGTGDQKDSSIGKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELVKIASDLDIIQKAGAWFSYNGEKIGQGSE
NAKRYLADHPQLFDEIDRKVRVKFGLLEESEEESAMAVASEETDDLALDLDNGIEIED

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=59952 L897_RS08725 WP_020837841.1 1746997..1748133(-) (recA) [Streptococcus pyogenes HSC5]
TTGGCAAAAAAATTAAAAAAGAATGAAGAAATCACTAAGAAGTTTGGTGACGAACGTCGCAAAGCCCTTGATGATGCTTT
GAAAAATATTGAAAAAGATTTTGGTAAGGGCGCAGTGATGCGATTAGGAGAACGTGCAGAGCAAAAAGTTCAGGTTATGA
GTTCAGGAAGTCTAGCTCTTGATATTGCGCTTGGAGCTGGTGGTTATCCTAAAGGACGTATCATCGAAATCTATGGTCCA
GAGTCTTCCGGTAAAACGACTGTGGCTTTACATGCTGTAGCACAAGCTCAAAAAGAAGGTGGAATCGCAGCCTTTATCGA
TGCCGAGCATGCGCTTGATCCAGCTTATGCTGCTGCGCTTGGGGTTAATATTGATAAACTCCTCTTGTCTCAACCAGATT
CTGGAGAACAAGGACTTGAAATTGCAGGTAAATTGATTGATTCTGGTGCGGTTGATCTGGTTGTTGTCGATTCAGTAGCA
GCTTTAGTGCCACGTGCTGAAATTGATGGTGATATTGGCGATAGCCATGTCGGATTGCAAGCACGTATGATGAGTCAGGC
CATGCGTAAATTATCAGCTTCTATTAATAAAACAAAAACTATCGCTATCTTTATTAACCAATTGCGTGAAAAAGTTGGTG
TGATGTTTGGAAATCCTGAAACAACACCAGGTGGTCGAGCTTTGAAATTCTATGCTTCTGTTCGGTTGGATGTGCGTGGA
ACAACTCAAATTAAAGGAACTGGTGACCAAAAAGATAGCAGTATTGGTAAGGAGACCAAAATCAAGGTTGTTAAAAACAA
GGTCGCTCCGCCATTTAAGGTAGCAGAAGTTGAAATCATGTATGGGGAAGGTATTTCTCGTACAGGGGAGCTTGTGAAAA
TTGCTTCTGATTTGGACATTATCCAAAAAGCAGGTGCTTGGTTCTCTTATAATGGTGAGAAGATTGGCCAAGGTTCTGAA
AATGCTAAGCGTTATTTGGCCGATCATCCACAATTGTTTGATGAAATCGACCGTAAAGTACGTGTTAAATTTGGTTTGCT
TGAAGAAAGCGAAGAAGAATCTGCTATGGCAGTAGCATCAGAAGAAACCGATGATCTTGCTTTAGATTTAGATAATGGTA
TTGAAATTGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pyogenes NZ131

99.471

100

0.995
  recA Streptococcus mutans UA159

87.206

100

0.884
  recA Streptococcus mitis NCTC 12261

85.079

100

0.86
  recA Streptococcus pneumoniae Rx1

84.156

100

0.857
  recA Streptococcus pneumoniae D39

84.156

100

0.857
  recA Streptococcus pneumoniae R6

84.156

100

0.857
  recA Streptococcus pneumoniae TIGR4

84.156

100

0.857
  recA Streptococcus mitis SK321

85.039

100

0.857
  recA Lactococcus lactis subsp. cremoris KW2

78.47

93.386

0.733
  recA Latilactobacillus sakei subsp. sakei 23K

70.623

89.153

0.63
  recA Bacillus subtilis subsp. subtilis str. 168

67.781

87.037

0.59
  recA Acinetobacter baylyi ADP1

60

92.593

0.556
  recA Acinetobacter baumannii D1279779

59.49

93.386

0.556
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.721

89.153

0.55
  recA Neisseria gonorrhoeae MS11

59.767

90.741

0.542
  recA Neisseria gonorrhoeae MS11

59.767

90.741

0.542
  recA Neisseria gonorrhoeae strain FA1090

59.767

90.741

0.542
  recA Vibrio cholerae strain A1552

58

92.593

0.537
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58

92.593

0.537
  recA Glaesserella parasuis strain SC1401

59.412

89.947

0.534
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.229

85.45

0.532
  recA Pseudomonas stutzeri DSM 10701

56.897

92.063

0.524
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.912

87.566

0.516
  recA Helicobacter pylori 26695

58.084

88.36

0.513
  recA Helicobacter pylori strain NCTC11637

58.084

88.36

0.513
  recA Ralstonia pseudosolanacearum GMI1000

57.831

87.831

0.508

Multiple sequence alignment