Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   K5K89_RS06875 Genome accession   NZ_CP081944
Coordinates   1572912..1573970 (+) Length   352 a.a.
NCBI ID   WP_003189042.1    Uniprot ID   A0A7Y7ZLK5
Organism   Pseudomonas sp. DR208     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1564705..1573970 1572912..1573970 within 0


Gene organization within MGE regions


Location: 1564705..1573970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5K89_RS06825 (K5K89_06825) - 1564705..1565634 (-) 930 WP_222541081.1 GyrI-like domain-containing protein -
  K5K89_RS06830 (K5K89_06830) - 1565760..1566494 (+) 735 WP_071488724.1 helix-turn-helix transcriptional regulator -
  K5K89_RS06835 (K5K89_06835) - 1566611..1567942 (+) 1332 WP_371914400.1 IS4 family transposase -
  K5K89_RS06840 (K5K89_06840) - 1568533..1568877 (+) 345 WP_071488725.1 phage holin family protein -
  K5K89_RS06845 (K5K89_06845) - 1568899..1569456 (+) 558 WP_222541082.1 hypothetical protein -
  K5K89_RS06850 (K5K89_06850) - 1569450..1569608 (+) 159 WP_099494182.1 zinc finger domain-containing protein -
  K5K89_RS06855 (K5K89_06855) - 1569647..1570609 (+) 963 WP_222541083.1 hypothetical protein -
  K5K89_RS06860 (K5K89_06860) - 1571239..1571796 (+) 558 WP_222541684.1 glycoside hydrolase family 19 protein -
  K5K89_RS06865 (K5K89_06865) - 1571784..1572245 (+) 462 WP_179030376.1 lysis system i-spanin subunit Rz -
  K5K89_RS06870 (K5K89_06870) - 1572327..1572827 (+) 501 WP_071488741.1 CinA family protein -
  K5K89_RS06875 (K5K89_06875) recA 1572912..1573970 (+) 1059 WP_003189042.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37580.12 Da        Isoelectric Point: 5.3036

>NTDB_id=598610 K5K89_RS06875 WP_003189042.1 1572912..1573970(+) (recA) [Pseudomonas sp. DR208]
MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGSKIGQGKANSAKFLADNPDIAATLEK
QIRDKLLTAAPDVKAAANREPVEEVEEADTDI

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=598610 K5K89_RS06875 WP_003189042.1 1572912..1573970(+) (recA) [Pseudomonas sp. DR208]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCATGACCGTCAGGCGATCCCGGCTATTTCCACTGGCTCTCTGGGTCTGGACATCGCACTCGGCATTGGCG
GCCTGCCAAAAGGCCGTATCGTTGAAATCTACGGTCCTGAATCTTCTGGTAAAACCACCCTGACCCTGTCGGTGATTGCC
CAGGCACAGAAAATGGGCGCCACCTGCGCCTTCGTCGATGCCGAGCACGCCCTGGATCCTGAATACGCCGGCAAGCTGGG
CGTCAACGTCGACGACCTGCTGGTCTCCCAGCCGGACACCGGTGAGCAGGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCATCGACGTGATCGTGGTCGACTCCGTGGCAGCCCTGGTCCCCAAGGCTGAAATCGAAGGCGAGATGGGTGAC
ATGCACGTGGGCCTGCAAGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCTTCGGTCCGTCTGGACATCCGCCGTACCGGCGCGGTGAAAGAAGGTGACGAGGTTGTGGGTAGCGAA
ACCCGCGTCAAAGTCGTGAAGAACAAAGTGGCTCCGCCTTTCCGTCAGGCCGAGTTCCAGATTCTCTACGGCAAGGGTAT
CTACCTGAACGGCGAGATGATCGACTTGGGCGTACTGCACGGTTTCGTCGAGAAATCGGGTGCCTGGTATGCCTACAACG
GCAGCAAGATCGGCCAAGGCAAGGCCAACTCGGCCAAGTTCCTGGCGGATAACCCGGACATCGCCGCCACGCTTGAGAAG
CAGATTCGCGACAAGCTGCTGACCGCAGCACCAGACGTGAAAGCTGCCGCTAACCGTGAGCCGGTTGAAGAAGTGGAAGA
AGCTGACACTGATATCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y7ZLK5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

87.5

100

0.875
  recA Acinetobacter baylyi ADP1

75

97.727

0.733
  recA Acinetobacter baumannii D1279779

73.178

97.443

0.713
  recA Vibrio cholerae O1 biovar El Tor strain E7946

75

93.182

0.699
  recA Vibrio cholerae strain A1552

75

93.182

0.699
  recA Glaesserella parasuis strain SC1401

69.034

100

0.69
  recA Ralstonia pseudosolanacearum GMI1000

70.149

95.17

0.668
  recA Neisseria gonorrhoeae MS11

72.222

92.045

0.665
  recA Neisseria gonorrhoeae MS11

72.222

92.045

0.665
  recA Neisseria gonorrhoeae strain FA1090

72.222

92.045

0.665
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.526

92.898

0.599
  recA Helicobacter pylori strain NCTC11637

59.659

100

0.597
  recA Helicobacter pylori 26695

59.091

100

0.591
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.677

94.886

0.585
  recA Bacillus subtilis subsp. subtilis str. 168

61.682

91.193

0.562
  recA Streptococcus mutans UA159

60

92.33

0.554
  recA Streptococcus mitis SK321

54.83

100

0.548
  recA Streptococcus pyogenes NZ131

58.232

93.182

0.543
  recA Streptococcus pneumoniae D39

58.589

92.614

0.543
  recA Streptococcus pneumoniae TIGR4

58.589

92.614

0.543
  recA Streptococcus pneumoniae Rx1

58.589

92.614

0.543
  recA Streptococcus pneumoniae R6

58.589

92.614

0.543
  recA Streptococcus mitis NCTC 12261

58.824

91.761

0.54
  recA Latilactobacillus sakei subsp. sakei 23K

58.879

91.193

0.537
  recA Lactococcus lactis subsp. cremoris KW2

57.276

91.761

0.526
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.748

92.614

0.526