Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | K5R88_RS27450 | Genome accession | NZ_CP081943 |
| Coordinates | 6039367..6040425 (+) | Length | 352 a.a. |
| NCBI ID | WP_008030012.1 | Uniprot ID | J3BNY5 |
| Organism | Pseudomonas sp. MM213 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 6022470..6040901 | 6039367..6040425 | within | 0 |
Gene organization within MGE regions
Location: 6022470..6040901
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K5R88_RS27335 (K5R88_27225) | - | 6022470..6023462 (-) | 993 | WP_223453207.1 | glycosyltransferase family 2 protein | - |
| K5R88_RS27340 (K5R88_27230) | - | 6023983..6024717 (+) | 735 | WP_226300289.1 | XRE family transcriptional regulator | - |
| K5R88_RS27345 (K5R88_27235) | - | 6025212..6025394 (+) | 183 | WP_226300290.1 | Com family DNA-binding transcriptional regulator | - |
| K5R88_RS27350 (K5R88_27240) | - | 6025500..6025688 (+) | 189 | WP_226298717.1 | hypothetical protein | - |
| K5R88_RS27355 (K5R88_27245) | - | 6025906..6026253 (+) | 348 | WP_008039324.1 | phage holin family protein | - |
| K5R88_RS27360 (K5R88_27250) | - | 6026342..6026866 (+) | 525 | WP_226298718.1 | hypothetical protein | - |
| K5R88_RS27365 (K5R88_27255) | - | 6026870..6027481 (+) | 612 | WP_008039320.1 | phage baseplate assembly protein V | - |
| K5R88_RS27370 (K5R88_27260) | - | 6027492..6027824 (+) | 333 | WP_008029983.1 | hypothetical protein | - |
| K5R88_RS27375 (K5R88_27265) | - | 6027821..6028816 (+) | 996 | WP_223453211.1 | baseplate J/gp47 family protein | - |
| K5R88_RS27380 (K5R88_27270) | - | 6028813..6029448 (+) | 636 | WP_223453212.1 | phage tail protein I | - |
| K5R88_RS27385 (K5R88_27275) | - | 6029449..6031179 (+) | 1731 | WP_226298719.1 | phage tail protein | - |
| K5R88_RS27390 (K5R88_27280) | - | 6031176..6031556 (+) | 381 | WP_008039313.1 | phage tail assembly chaperone | - |
| K5R88_RS27395 (K5R88_27285) | - | 6031661..6031870 (+) | 210 | WP_008029992.1 | hypothetical protein | - |
| K5R88_RS27400 (K5R88_27290) | - | 6031873..6033039 (+) | 1167 | WP_223414422.1 | phage tail protein | - |
| K5R88_RS27405 (K5R88_27295) | - | 6033039..6033545 (+) | 507 | WP_192228509.1 | phage major tail tube protein | - |
| K5R88_RS27410 (K5R88_27300) | - | 6033705..6034289 (+) | 585 | WP_223453215.1 | phage tail assembly protein | - |
| K5R88_RS27415 (K5R88_27305) | - | 6034418..6035950 (+) | 1533 | WP_226298720.1 | hypothetical protein | - |
| K5R88_RS27420 (K5R88_27310) | - | 6035950..6036333 (+) | 384 | WP_207285798.1 | phage tail protein | - |
| K5R88_RS27425 (K5R88_27315) | - | 6036326..6036538 (+) | 213 | WP_207285797.1 | tail protein X | - |
| K5R88_RS27430 (K5R88_27320) | - | 6036548..6037561 (+) | 1014 | WP_226298721.1 | phage late control D family protein | - |
| K5R88_RS27435 (K5R88_27325) | - | 6037622..6038185 (+) | 564 | WP_008039295.1 | glycoside hydrolase family 19 protein | - |
| K5R88_RS27440 (K5R88_27330) | - | 6038167..6038703 (+) | 537 | WP_226298722.1 | lysis system i-spanin subunit Rz | - |
| K5R88_RS27445 (K5R88_27335) | - | 6038783..6039283 (+) | 501 | WP_192228516.1 | CinA family protein | - |
| K5R88_RS27450 (K5R88_27340) | recA | 6039367..6040425 (+) | 1059 | WP_008030012.1 | recombinase RecA | Machinery gene |
| K5R88_RS27455 (K5R88_27345) | recX | 6040434..6040901 (+) | 468 | WP_223553049.1 | recombination regulator RecX | - |
Sequence
Protein
Download Length: 352 a.a. Molecular weight: 37465.95 Da Isoelectric Point: 5.3150
>NTDB_id=598603 K5R88_RS27450 WP_008030012.1 6039367..6040425(+) (recA) [Pseudomonas sp. MM213]
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYEGTKIGQGKANSAKFLADNPEIAAKLEK
QLRDKLLSPSSVAESKASAVKETEDDLADADI
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYEGTKIGQGKANSAKFLADNPEIAAKLEK
QLRDKLLSPSSVAESKASAVKETEDDLADADI
Nucleotide
Download Length: 1059 bp
>NTDB_id=598603 K5R88_RS27450 WP_008030012.1 6039367..6040425(+) (recA) [Pseudomonas sp. MM213]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCGATCCCGGCTATTTCCACTGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCG
GTCTGCCAAAAGGCCGTATCGTTGAAATCTACGGTCCTGAATCCTCCGGTAAAACTACGCTGACACTGTCGGTGATCGCT
CAGGCTCAAAAAGCCGGCGCGACCTGCGCATTCGTCGACGCCGAACACGCCCTCGATCCTGAATACGCCGGCAAGCTTGG
CGTCAACGTCGACGACCTGCTGGTTTCCCAGCCGGACACCGGTGAGCAGGCCCTGGAAATCACCGACATGCTGGTGCGTT
CCAACGCGGTTGACGTGATCATCGTCGACTCCGTAGCCGCCCTGGTTCCAAAGGCTGAAATCGAAGGCGAAATGGGTGAC
ATGCACGTGGGCCTGCAAGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGTATGAAAATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCTTCGGTTCGTCTGGACATCCGTCGTACTGGCGCGGTGAAAGAAGGTGATGAAGTCGTCGGTAGCGAA
ACCCGCGTCAAGGTTGTGAAGAACAAGGTTGCTTCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTACGGCAAGGGCAT
CTACCTGAACGGTGAGATGATCGACCTGGGTGTTCTGCACGGTTTCGTCGAGAAGTCCGGTGCCTGGTATGCCTACGAAG
GCACCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCGGACAACCCGGAAATCGCGGCGAAACTTGAGAAG
CAATTGCGTGACAAGTTGCTGTCTCCGTCATCGGTAGCGGAATCCAAAGCCTCTGCGGTCAAAGAGACTGAAGATGACCT
GGCTGACGCTGATATCTGA
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCGATCCCGGCTATTTCCACTGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCG
GTCTGCCAAAAGGCCGTATCGTTGAAATCTACGGTCCTGAATCCTCCGGTAAAACTACGCTGACACTGTCGGTGATCGCT
CAGGCTCAAAAAGCCGGCGCGACCTGCGCATTCGTCGACGCCGAACACGCCCTCGATCCTGAATACGCCGGCAAGCTTGG
CGTCAACGTCGACGACCTGCTGGTTTCCCAGCCGGACACCGGTGAGCAGGCCCTGGAAATCACCGACATGCTGGTGCGTT
CCAACGCGGTTGACGTGATCATCGTCGACTCCGTAGCCGCCCTGGTTCCAAAGGCTGAAATCGAAGGCGAAATGGGTGAC
ATGCACGTGGGCCTGCAAGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGTATGAAAATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCTTCGGTTCGTCTGGACATCCGTCGTACTGGCGCGGTGAAAGAAGGTGATGAAGTCGTCGGTAGCGAA
ACCCGCGTCAAGGTTGTGAAGAACAAGGTTGCTTCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTACGGCAAGGGCAT
CTACCTGAACGGTGAGATGATCGACCTGGGTGTTCTGCACGGTTTCGTCGAGAAGTCCGGTGCCTGGTATGCCTACGAAG
GCACCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCGGACAACCCGGAAATCGCGGCGAAACTTGAGAAG
CAATTGCGTGACAAGTTGCTGTCTCCGTCATCGGTAGCGGAATCCAAAGCCTCTGCGGTCAAAGAGACTGAAGATGACCT
GGCTGACGCTGATATCTGA
Similar proteins
Only experimentally validated proteins are listed.