Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   K5Q02_RS11705 Genome accession   NZ_CP081942
Coordinates   2569246..2570289 (+) Length   347 a.a.
NCBI ID   WP_225839387.1    Uniprot ID   -
Organism   Pseudomonas sp. MM211     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2564246..2575289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5Q02_RS11685 (K5Q02_11640) - 2564577..2564933 (+) 357 WP_225839382.1 PilZ domain-containing protein -
  K5Q02_RS11690 (K5Q02_11645) fdxA 2565531..2565854 (-) 324 WP_042552052.1 ferredoxin FdxA -
  K5Q02_RS11695 (K5Q02_11650) mutS 2565998..2568571 (-) 2574 WP_225839384.1 DNA mismatch repair protein MutS -
  K5Q02_RS11700 (K5Q02_11655) - 2568650..2569162 (+) 513 WP_225839386.1 CinA family protein -
  K5Q02_RS11705 (K5Q02_11660) recA 2569246..2570289 (+) 1044 WP_225839387.1 recombinase RecA Machinery gene
  K5Q02_RS11710 (K5Q02_11665) recX 2570299..2570766 (+) 468 WP_225839389.1 recombination regulator RecX -
  K5Q02_RS11715 (K5Q02_11670) - 2571004..2572077 (-) 1074 WP_225839390.1 LOG family protein -
  K5Q02_RS11720 (K5Q02_11675) - 2572155..2572556 (-) 402 WP_225839392.1 quorum-sensing-regulated virulence factor family protein -
  K5Q02_RS11725 (K5Q02_11680) - 2572806..2573516 (+) 711 WP_225839393.1 tRNA-uridine aminocarboxypropyltransferase -
  K5Q02_RS11730 (K5Q02_11685) - 2573500..2574396 (-) 897 WP_225839395.1 DMT family transporter -
  K5Q02_RS11735 (K5Q02_11690) erdR 2574549..2575199 (+) 651 WP_225839398.1 response regulator transcription factor ErdR -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37078.53 Da        Isoelectric Point: 5.8093

>NTDB_id=598566 K5Q02_RS11705 WP_225839387.1 2569246..2570289(+) (recA) [Pseudomonas sp. MM211]
MDENKKRALSAALGQIEKQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQRMGATCAFVDAEHALDPDYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKDGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYRNGEVIDLGVQHGFVEKAGAWYSYQGNKIGQGKANAAKYLEDNPEIGRAIEG
LIREKLLVVSPTVKANSGAEVDAEVDL

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=598566 K5Q02_RS11705 WP_225839387.1 2569246..2570289(+) (recA) [Pseudomonas sp. MM211]
ATGGACGAGAACAAGAAGCGCGCTTTGTCGGCTGCACTGGGCCAGATCGAGAAGCAGTTCGGCAAAGGCGCGGTAATGCG
CATGGGCGATCATGATCGTCAGGCGATTCCAGCCATTTCCACCGGCTCTCTGGGCCTGGACATCGCGCTGGGTATCGGTG
GTCTGCCGAAAGGCCGCATCGTCGAAATCTACGGCCCGGAATCCTCAGGCAAGACCACGCTGACCCTGTCGGTCATCGCC
GAAGCGCAGCGTATGGGCGCCACCTGTGCCTTCGTCGATGCCGAGCACGCATTGGATCCGGATTACGCTGGCAAACTGGG
CGTCAATGTTGACGACCTGTTGGTCTCGCAGCCTGACACCGGCGAGCAGGCTCTGGAAATCACCGACATGCTGGTGCGTT
CCAACGCCGTCGACGTGATCATCGTCGACTCCGTGGCGGCCCTGGTGCCGAAGGCTGAAATCGAAGGTGAAATGGGCGAC
ATGCACGTCGGCCTGCAGGCGCGTCTGATGTCTCAGGCGCTGCGCAAGATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGTAGCCCGGAAACCACCACCGGTGGTAACGCCC
TGAAGTTCTACGCTTCGGTTCGTCTGGATATCCGTCGTACCGGCGCAGTGAAGGACGGCGACGAGGTGGTCGGCAGCGAA
ACCCGCGTCAAAGTGGTCAAGAACAAGGTGGCACCGCCATTCCGTCAAGCCGAGTTCCAGATTCTCTACGGCAAGGGTAT
CTACCGTAATGGCGAGGTCATCGACCTGGGTGTGCAGCACGGCTTCGTCGAGAAAGCCGGTGCCTGGTACAGCTACCAAG
GCAACAAGATCGGTCAGGGCAAGGCCAACGCCGCCAAGTACCTGGAAGACAACCCGGAGATTGGCCGTGCCATCGAAGGC
CTGATCCGCGAGAAGTTGCTCGTTGTCAGTCCTACGGTAAAAGCCAATTCGGGCGCTGAAGTCGACGCCGAAGTCGACCT
CTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

91.066

100

0.911
  recA Acinetobacter baylyi ADP1

74.352

100

0.744
  recA Acinetobacter baumannii D1279779

73.837

99.135

0.732
  recA Vibrio cholerae strain A1552

75.229

94.236

0.709
  recA Vibrio cholerae O1 biovar El Tor strain E7946

75.229

94.236

0.709
  recA Glaesserella parasuis strain SC1401

70.145

99.424

0.697
  recA Ralstonia pseudosolanacearum GMI1000

73.955

89.625

0.663
  recA Neisseria gonorrhoeae MS11

70.679

93.372

0.66
  recA Neisseria gonorrhoeae MS11

70.679

93.372

0.66
  recA Neisseria gonorrhoeae strain FA1090

70.679

93.372

0.66
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.914

94.236

0.602
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.677

96.254

0.594
  recA Helicobacter pylori strain NCTC11637

62.997

94.236

0.594
  recA Helicobacter pylori 26695

62.385

94.236

0.588
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

92.507

0.576
  recA Streptococcus mitis NCTC 12261

56.936

99.712

0.568
  recA Streptococcus mitis SK321

56.647

99.712

0.565
  recA Streptococcus mutans UA159

60

93.66

0.562
  recA Streptococcus pyogenes NZ131

58.537

94.524

0.553
  recA Streptococcus pneumoniae D39

58.896

93.948

0.553
  recA Streptococcus pneumoniae Rx1

58.896

93.948

0.553
  recA Streptococcus pneumoniae R6

58.896

93.948

0.553
  recA Streptococcus pneumoniae TIGR4

58.896

93.948

0.553
  recA Latilactobacillus sakei subsp. sakei 23K

60.577

89.914

0.545
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.828

93.948

0.524
  recA Lactococcus lactis subsp. cremoris KW2

55.728

93.084

0.519