Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   K5P74_RS00740 Genome accession   NZ_CP081846
Coordinates   143684..144733 (+) Length   349 a.a.
NCBI ID   WP_222226244.1    Uniprot ID   -
Organism   Enterococcus raffinosus strain CX012922     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 138684..149733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5P74_RS00720 (K5P74_00720) ymfI 139796..140521 (+) 726 WP_010747264.1 elongation factor P 5-aminopentanone reductase -
  K5P74_RS00725 (K5P74_00725) - 140650..141516 (+) 867 WP_218256360.1 RodZ domain-containing protein -
  K5P74_RS00730 (K5P74_00730) pgsA 141551..142132 (+) 582 WP_222226243.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  K5P74_RS00735 (K5P74_00735) cinA 142313..143560 (+) 1248 WP_010747261.1 competence/damage-inducible protein A Machinery gene
  K5P74_RS00740 (K5P74_00740) recA 143684..144733 (+) 1050 WP_222226244.1 recombinase RecA Machinery gene
  K5P74_RS00745 (K5P74_00745) rny 144977..146533 (+) 1557 WP_010747259.1 ribonuclease Y -
  K5P74_RS00750 (K5P74_00750) mprF 146691..149252 (+) 2562 WP_222226245.1 bifunctional lysylphosphatidylglycerol flippase/synthetase MprF -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37410.59 Da        Isoelectric Point: 4.8948

>NTDB_id=597692 K5P74_RS00740 WP_222226244.1 143684..144733(+) (recA) [Enterococcus raffinosus strain CX012922]
MANDRKAALDAAMKKIEKNYGKGSIMKLGEKVDQQISTIPSGSLALDVALGVGGYPRGRIIEVYGPESSGKTTVALHAIA
EVQKHGGTAAFIDAEHALDPQYAQRLGVNIDELLLSQPDTGEQGLEIADALVSSGAVDIIVIDSVAALVPRAEIDGEMGD
AHVGLQARLMSQALRKLSGSINKTKTIAVFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRAEQLKNGTDIVGNR
TKIKVVKNKVAPPFKVAEVDIMYGLGISQEGELLDMAVEQDIIDKSGAWYGYKEDRIGQGRENAKKYLADHPEMMAEVAT
RVRVAYGIGDDAAAADAEEAGQEELPLDE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=597692 K5P74_RS00740 WP_222226244.1 143684..144733(+) (recA) [Enterococcus raffinosus strain CX012922]
TTGGCAAATGATCGCAAGGCAGCTTTAGATGCTGCGATGAAGAAGATTGAAAAGAATTATGGTAAAGGTTCGATCATGAA
GTTAGGTGAGAAGGTCGATCAACAAATTTCAACGATTCCGAGTGGCTCTTTGGCATTGGACGTTGCGTTAGGTGTTGGCG
GGTACCCTCGCGGACGAATCATTGAAGTATACGGACCAGAAAGTTCTGGTAAAACAACGGTGGCATTACATGCCATCGCG
GAAGTCCAAAAGCATGGTGGTACCGCAGCCTTTATTGATGCTGAACATGCGTTGGATCCACAATACGCACAGCGTTTAGG
TGTAAATATCGATGAGCTGCTGCTTTCACAGCCAGATACTGGTGAGCAAGGTCTAGAGATCGCTGATGCATTAGTTTCCA
GTGGCGCTGTTGATATCATCGTTATCGACTCAGTAGCGGCTTTAGTACCGCGTGCCGAGATCGATGGAGAGATGGGAGAC
GCTCACGTTGGTTTGCAAGCACGTTTGATGTCTCAAGCGTTACGTAAGTTGTCTGGTTCGATTAACAAAACCAAAACAAT
CGCGGTCTTCATCAACCAAATTCGTGAAAAAGTCGGCGTAATGTTTGGGAACCCTGAAACAACTCCTGGTGGACGCGCGT
TGAAATTCTACGCAACAGTTCGTTTAGAAGTACGTCGTGCAGAGCAATTGAAGAATGGGACTGACATTGTCGGCAACCGC
ACGAAGATCAAAGTTGTTAAGAACAAGGTAGCGCCGCCATTCAAGGTAGCCGAAGTCGATATTATGTACGGACTTGGGAT
TTCACAAGAGGGCGAATTGCTGGATATGGCTGTTGAACAAGACATCATTGATAAGAGTGGTGCTTGGTATGGCTATAAAG
AAGATCGTATTGGTCAAGGGCGTGAGAACGCGAAGAAATATTTGGCTGATCATCCAGAAATGATGGCCGAAGTTGCTACT
CGTGTCAGAGTTGCGTACGGTATTGGCGACGATGCGGCAGCAGCAGATGCTGAAGAAGCAGGACAAGAAGAATTGCCTTT
AGATGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

82.477

94.842

0.782
  recA Bacillus subtilis subsp. subtilis str. 168

76.9

94.269

0.725
  recA Streptococcus mitis SK321

69.101

100

0.705
  recA Streptococcus pneumoniae Rx1

68.056

100

0.702
  recA Streptococcus pneumoniae D39

68.056

100

0.702
  recA Streptococcus pneumoniae R6

68.056

100

0.702
  recA Streptococcus pneumoniae TIGR4

68.056

100

0.702
  recA Streptococcus mitis NCTC 12261

68.82

100

0.702
  recA Streptococcus pyogenes NZ131

70.091

94.842

0.665
  recA Streptococcus mutans UA159

68.769

95.415

0.656
  recA Lactococcus lactis subsp. cremoris KW2

67.56

96.275

0.65
  recA Glaesserella parasuis strain SC1401

58.689

100

0.59
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.691

93.696

0.587
  recA Ralstonia pseudosolanacearum GMI1000

62.963

92.837

0.585
  recA Neisseria gonorrhoeae MS11

61.094

94.269

0.576
  recA Neisseria gonorrhoeae MS11

61.094

94.269

0.576
  recA Neisseria gonorrhoeae strain FA1090

61.094

94.269

0.576
  recA Acinetobacter baylyi ADP1

58.651

97.708

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.606

94.556

0.573
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.486

94.269

0.57
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.3

92.55

0.567
  recA Pseudomonas stutzeri DSM 10701

61.3

92.55

0.567
  recA Vibrio cholerae strain A1552

61.3

92.55

0.567
  recA Acinetobacter baumannii D1279779

60.991

92.55

0.564
  recA Helicobacter pylori strain NCTC11637

58.769

93.123

0.547
  recA Helicobacter pylori 26695

58.769

93.123

0.547