Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   K5K97_RS08600 Genome accession   NZ_CP081470
Coordinates   1678460..1679509 (+) Length   349 a.a.
NCBI ID   WP_167799679.1    Uniprot ID   -
Organism   Vagococcus fluvialis strain 25B2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1673460..1684509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5K97_RS08575 (K5K97_08570) - 1674618..1674848 (+) 231 WP_167799683.1 hypothetical protein -
  K5K97_RS08580 (K5K97_08575) - 1674863..1675402 (-) 540 WP_227288502.1 putative glycolipid-binding domain-containing protein -
  K5K97_RS08585 (K5K97_08580) sdaAA 1675420..1676289 (-) 870 WP_227288503.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  K5K97_RS08590 (K5K97_08585) sdaAB 1676302..1676961 (-) 660 WP_114289892.1 L-serine ammonia-lyase, iron-sulfur-dependent subunit beta -
  K5K97_RS08595 (K5K97_08590) - 1677133..1678371 (+) 1239 WP_207060219.1 competence/damage-inducible protein A -
  K5K97_RS08600 (K5K97_08595) recA 1678460..1679509 (+) 1050 WP_167799679.1 recombinase RecA Machinery gene
  K5K97_RS08605 (K5K97_08600) rny 1679727..1681280 (+) 1554 WP_086341214.1 ribonuclease Y -
  K5K97_RS08610 (K5K97_08605) - 1681402..1682283 (+) 882 WP_114289889.1 AraC family transcriptional regulator -
  K5K97_RS08615 (K5K97_08610) - 1682357..1683436 (+) 1080 WP_207058364.1 Gfo/Idh/MocA family protein -
  K5K97_RS08620 (K5K97_08615) - 1683505..1684230 (+) 726 WP_167806093.1 ThuA domain-containing protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37664.84 Da        Isoelectric Point: 4.6599

>NTDB_id=596672 K5K97_RS08600 WP_167799679.1 1678460..1679509(+) (recA) [Vagococcus fluvialis strain 25B2]
MSDNRKAALDAALKKIEKDFGKGSVMKLGEKVDTQISTVSSGSLALDSALGVGGYPRGRIIEVYGPESSGKTTVALHAIA
SVQKQGGTAAFIDAEHALDPKYAQALGVNIDELLLSQPDTGEQGLNIAEALVSSGAIDIVVVDSVAALVPRAEIDGEMGD
SHVGLQARLMSQALRKLSGTINKTKTIAIFINQIREKVGVMFGNPEVTPGGRALKFYATVRLEVRRAEQLKQGTDIIGNR
TKIKVVKNKVAPPFRIAEVDIMYGEGISQEGELLDMASDKDIVNKSGAWYSYNDEKIGQGRENAKKFLADNPDIMQEIYE
KVRIAYNMDGVILEEVEEDVEDLGLDLEE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=596672 K5K97_RS08600 WP_167799679.1 1678460..1679509(+) (recA) [Vagococcus fluvialis strain 25B2]
ATGTCAGATAATCGTAAAGCAGCATTAGATGCAGCATTAAAGAAGATAGAAAAAGATTTTGGTAAAGGATCAGTAATGAA
GTTAGGTGAGAAAGTAGATACTCAAATTTCTACAGTTTCAAGTGGTTCTTTAGCTTTAGACTCAGCTTTAGGAGTTGGTG
GCTATCCTCGAGGTAGAATTATTGAAGTCTATGGACCAGAGAGTTCTGGTAAAACAACAGTCGCTTTACACGCTATTGCC
TCAGTTCAAAAACAAGGTGGAACAGCAGCGTTTATCGATGCTGAGCATGCCTTAGATCCTAAATATGCACAAGCTTTAGG
AGTAAATATTGATGAATTACTATTATCTCAACCAGATACAGGTGAGCAAGGATTAAACATTGCAGAAGCTTTAGTATCAA
GTGGTGCCATTGATATTGTAGTAGTTGACTCGGTAGCAGCTTTAGTACCACGTGCTGAGATTGATGGAGAGATGGGAGAC
AGCCACGTAGGTTTACAAGCTCGTTTAATGTCTCAAGCTCTAAGAAAATTATCAGGTACTATTAACAAAACTAAAACAAT
TGCGATTTTCATTAACCAAATCCGTGAAAAAGTTGGAGTTATGTTTGGTAACCCAGAAGTAACACCAGGTGGACGTGCAC
TTAAGTTCTACGCAACAGTTCGTTTAGAAGTAAGACGTGCAGAGCAGTTAAAACAAGGTACAGACATTATTGGTAACCGT
ACTAAAATTAAAGTTGTTAAAAATAAAGTAGCTCCTCCGTTTAGAATTGCTGAAGTAGATATTATGTACGGAGAAGGTAT
CTCTCAAGAAGGAGAACTTCTTGACATGGCTTCAGATAAAGATATCGTTAATAAGAGTGGTGCTTGGTATTCTTATAACG
ATGAGAAAATTGGTCAAGGGCGAGAAAATGCTAAGAAATTCTTAGCTGATAATCCTGATATTATGCAAGAAATCTATGAA
AAAGTCCGTATCGCATATAATATGGATGGCGTTATTCTTGAAGAAGTAGAGGAAGACGTAGAAGATTTAGGATTAGATTT
AGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

81.138

95.702

0.777
  recA Bacillus subtilis subsp. subtilis str. 168

81.459

94.269

0.768
  recA Streptococcus pyogenes NZ131

69.188

100

0.708
  recA Streptococcus mitis NCTC 12261

72.012

98.281

0.708
  recA Streptococcus pneumoniae TIGR4

71.802

98.567

0.708
  recA Streptococcus pneumoniae Rx1

71.802

98.567

0.708
  recA Streptococcus pneumoniae D39

71.802

98.567

0.708
  recA Streptococcus pneumoniae R6

71.802

98.567

0.708
  recA Streptococcus mitis SK321

71.72

98.281

0.705
  recA Streptococcus mutans UA159

72.892

95.129

0.693
  recA Lactococcus lactis subsp. cremoris KW2

70.427

93.983

0.662
  recA Ralstonia pseudosolanacearum GMI1000

60.795

100

0.613
  recA Neisseria gonorrhoeae strain FA1090

61.696

97.994

0.605
  recA Neisseria gonorrhoeae MS11

61.696

97.994

0.605
  recA Neisseria gonorrhoeae MS11

61.696

97.994

0.605
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.462

95.415

0.596
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.11

93.983

0.593
  recA Glaesserella parasuis strain SC1401

62.048

95.129

0.59
  recA Acinetobacter baylyi ADP1

63.467

92.55

0.587
  recA Acinetobacter baumannii D1279779

62.539

92.55

0.579
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.733

92.264

0.579
  recA Helicobacter pylori 26695

58.721

98.567

0.579
  recA Helicobacter pylori strain NCTC11637

58.721

98.567

0.579
  recA Vibrio cholerae strain A1552

61.61

92.55

0.57
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.61

92.55

0.57
  recA Pseudomonas stutzeri DSM 10701

61.3

92.55

0.567