Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   K1M40_RS05940 Genome accession   NZ_CP081447
Coordinates   1197193..1198278 (-) Length   361 a.a.
NCBI ID   WP_002964332.1    Uniprot ID   A0A1M4LB69
Organism   Brucella abortus strain LBAB012     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1192193..1203278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K1M40_RS05930 (K1M40_05780) phoA 1192546..1193991 (+) 1446 WP_002964329.1 alkaline phosphatase -
  K1M40_RS05935 (K1M40_05785) alaS 1194143..1196800 (-) 2658 WP_002964330.1 alanine--tRNA ligase -
  K1M40_RS05940 (K1M40_05790) recA 1197193..1198278 (-) 1086 WP_002964332.1 recombinase RecA Machinery gene
  K1M40_RS05945 (K1M40_05795) - 1198609..1199271 (-) 663 WP_002964333.1 OmpA family protein -
  K1M40_RS05950 (K1M40_05800) - 1199358..1199942 (-) 585 WP_002964334.1 transglycosylase SLT domain-containing protein -
  K1M40_RS05955 (K1M40_05805) - 1200066..1201379 (-) 1314 WP_002964335.1 replication-associated recombination protein A -
  K1M40_RS05960 (K1M40_05810) - 1201526..1202950 (-) 1425 WP_002964336.1 DegQ family serine endoprotease -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 38735.14 Da        Isoelectric Point: 4.8780

>NTDB_id=596409 K1M40_RS05940 WP_002964332.1 1197193..1198278(-) (recA) [Brucella abortus strain LBAB012]
MSQNSLRLVEDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVEIETVSTGSLSLDIALGVGGLPKGRIVEIYGPES
SGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLVRSGAIDVLVVDSVAAL
TPRAEIEGEMGDSLPGLQARLMSQALRKLTGSISRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIG
SIKERDEVVGNQTRVKVVKNKLAPPFKQVEFDIMYGAGVSKVGELVDLGVKAGVVEKSGAWFSYNSQRLGQGRENAKQYL
KDNPEVAREIETTLRQNAGLIAEQFLDDGGPEEDAAGAAEM

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=596409 K1M40_RS05940 WP_002964332.1 1197193..1198278(-) (recA) [Brucella abortus strain LBAB012]
ATGTCTCAAAATTCATTGCGACTTGTTGAGGATAATTCAGTGGACAAGACAAAAGCTCTCGACGCGGCATTGTCGCAAAT
CGAACGGGCGTTCGGCAAAGGCTCAATCATGCGTCTGGGCCAGAACGATCAGGTGGTCGAAATCGAAACCGTATCGACCG
GCTCGCTCTCGCTCGATATTGCCTTGGGGGTTGGCGGCTTGCCCAAGGGACGTATCGTGGAAATCTATGGGCCGGAAAGT
TCCGGTAAAACCACGCTTGCCTTGCACACCATCGCTGAAGCGCAGAAGAAGGGCGGCATCTGCGCATTCGTCGATGCGGA
ACATGCGCTTGACCCGGTCTATGCGCGCAAGCTCGGTGTCGATCTTGAAAATCTTCTGATCTCGCAGCCCGATACGGGTG
AACAGGCGCTTGAAATCACCGATACGCTCGTGCGCTCTGGCGCCATCGACGTTCTCGTTGTCGACTCGGTCGCAGCCCTG
ACGCCGCGTGCTGAAATCGAAGGTGAAATGGGGGATTCCCTGCCGGGCCTTCAGGCCCGTCTCATGAGCCAGGCGCTGCG
CAAGCTTACTGGCTCCATTTCCCGTTCAAACTGCATGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGTGTCATGT
TCGGCTCGCCGGAAACGACAACGGGCGGCAATGCGCTCAAGTTCTATGCTTCGGTTCGCCTCGATATTCGCCGTATCGGC
TCCATCAAGGAGCGCGACGAAGTGGTGGGCAACCAGACCCGCGTGAAGGTGGTGAAGAACAAGCTCGCTCCTCCGTTCAA
GCAGGTCGAATTCGATATCATGTATGGCGCGGGCGTTTCCAAGGTGGGCGAGCTGGTCGATCTTGGTGTCAAGGCCGGTG
TGGTTGAGAAGTCTGGTGCCTGGTTCTCCTATAATTCCCAGCGTCTCGGGCAGGGGCGCGAGAACGCCAAGCAATATCTC
AAGGATAATCCGGAAGTCGCGCGTGAAATCGAAACCACGCTTCGCCAGAATGCCGGCCTGATCGCCGAGCAGTTCCTTGA
CGATGGCGGACCGGAAGAAGATGCTGCCGGCGCGGCGGAAATGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(18-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1M4LB69

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

71.045

92.798

0.659
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.045

92.798

0.659
  recA Acinetobacter baylyi ADP1

72.36

89.197

0.645
  recA Acinetobacter baumannii D1279779

72.05

89.197

0.643
  recA Neisseria gonorrhoeae strain FA1090

68.035

94.46

0.643
  recA Neisseria gonorrhoeae MS11

68.035

94.46

0.643
  recA Neisseria gonorrhoeae MS11

68.035

94.46

0.643
  recA Ralstonia pseudosolanacearum GMI1000

73.885

86.981

0.643
  recA Glaesserella parasuis strain SC1401

67.347

95.014

0.64
  recA Pseudomonas stutzeri DSM 10701

71.34

88.92

0.634
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.361

90.582

0.601
  recA Helicobacter pylori 26695

65.644

90.305

0.593
  recA Bacillus subtilis subsp. subtilis str. 168

65.337

90.305

0.59
  recA Helicobacter pylori strain NCTC11637

65.337

90.305

0.59
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.832

90.582

0.587
  recA Latilactobacillus sakei subsp. sakei 23K

62.883

90.305

0.568
  recA Streptococcus mitis SK321

61.027

91.69

0.56
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.813

88.643

0.557
  recA Streptococcus mitis NCTC 12261

60.725

91.69

0.557
  recA Streptococcus pneumoniae TIGR4

59.819

91.69

0.548
  recA Streptococcus pneumoniae Rx1

59.819

91.69

0.548
  recA Streptococcus pneumoniae D39

59.819

91.69

0.548
  recA Streptococcus pneumoniae R6

59.819

91.69

0.548
  recA Streptococcus mutans UA159

59.459

92.244

0.548
  recA Streptococcus pyogenes NZ131

59.878

91.136

0.546
  recA Lactococcus lactis subsp. cremoris KW2

59.215

91.69

0.543