Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   Cf24236_RS18375 Genome accession   NZ_CP081314
Coordinates   3851276..3852337 (-) Length   353 a.a.
NCBI ID   WP_216526486.1    Uniprot ID   -
Organism   Citrobacter farmeri strain CCRI-24236     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3846276..3857337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Cf24236_RS18360 (Cf24236_3661) csrA 3847354..3847539 (-) 186 WP_000906486.1 carbon storage regulator CsrA -
  Cf24236_RS18365 (Cf24236_3662) alaS 3847903..3850530 (-) 2628 WP_216526485.1 alanine--tRNA ligase -
  Cf24236_RS18370 (Cf24236_3663) recX 3850659..3851159 (-) 501 WP_195619455.1 recombination regulator RecX -
  Cf24236_RS18375 (Cf24236_3664) recA 3851276..3852337 (-) 1062 WP_216526486.1 recombinase RecA Machinery gene
  Cf24236_RS18380 (Cf24236_3665) pncC 3852418..3852915 (-) 498 WP_195296761.1 nicotinamide-nucleotide amidase -
  Cf24236_RS18385 (Cf24236_3666) mltB 3853059..3854138 (-) 1080 WP_046486369.1 lytic murein transglycosylase B -
  Cf24236_RS18390 (Cf24236_3667) srlA 3854408..3854971 (+) 564 WP_042322680.1 PTS glucitol/sorbitol transporter subunit IIC -
  Cf24236_RS18395 (Cf24236_3668) srlE 3854968..3855951 (+) 984 WP_216526487.1 PTS glucitol/sorbitol transporter subunit IIB -
  Cf24236_RS18400 (Cf24236_3669) srlB 3855963..3856325 (+) 363 WP_046486374.1 PTS glucitol/sorbitol transporter subunit IIA -
  Cf24236_RS18405 (Cf24236_3670) srlD 3856336..3857115 (+) 780 WP_042322675.1 sorbitol-6-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37989.39 Da        Isoelectric Point: 4.8095

>NTDB_id=595977 Cf24236_RS18375 WP_216526486.1 3851276..3852337(-) (recA) [Citrobacter farmeri strain CCRI-24236]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGKANATAWLKDNPATAKEI
EKKVREMLLNNQDAKPDFTVDDGESVAETNEDF

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=595977 Cf24236_RS18375 WP_216526486.1 3851276..3852337(-) (recA) [Citrobacter farmeri strain CCRI-24236]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCGCTGGGCCAGATCGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCTATGGACGTGGAAACAATCTCCACCGGTTCGCTTTCACTGGATATCGCGCTGGGTG
CAGGCGGTCTGCCGATGGGCCGTATCGTCGAAATCTACGGGCCGGAATCTTCCGGTAAAACCACGCTGACGCTGCAGGTG
ATTGCCGCGGCGCAGCGCGAAGGTAAAACCTGTGCGTTTATCGATGCAGAACATGCGCTGGATCCTATCTATGCTCGTAA
GCTGGGTGTTGATATTGACAATCTGCTCTGTTCTCAGCCGGACACCGGTGAACAGGCGCTGGAAATCTGTGACGCGCTGG
CACGTTCTGGTGCCGTTGACGTTATCGTTGTCGACTCCGTGGCGGCGTTGACGCCGAAAGCGGAAATCGAAGGCGAAATC
GGTGACTCTCATATGGGCCTCGCAGCGCGTATGATGAGCCAGGCGATGCGTAAACTGGCCGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGTGTAATGTTCGGTAACCCGGAAACCACCACGGGTGGTA
ACGCACTGAAATTCTATGCGTCTGTTCGTCTGGACATCCGTCGTATTGGCGCGGTGAAAGAGGGCGATAACGTGGTGGGC
AGCGAAACCCGCGTGAAGGTGGTGAAAAACAAAATCGCGGCGCCGTTTAAACAGGCTGAATTCCAGATCCTTTACGGTGA
AGGTATCAACTTCTATGGCGAACTGGTTGACCTGGGCGTGAAAGAGAAGCTGATCGAGAAAGCGGGCGCATGGTACAGCT
ACAACGGCGAGAAAATTGGTCAGGGTAAAGCGAATGCCACAGCCTGGCTGAAAGACAACCCGGCTACCGCGAAGGAAATT
GAGAAGAAAGTTCGCGAAATGCTGCTCAATAACCAGGATGCCAAACCCGACTTCACCGTTGATGACGGTGAAAGCGTTGC
GGAAACCAACGAAGATTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

84.29

93.768

0.79
  recA Vibrio cholerae O1 biovar El Tor strain E7946

84.29

93.768

0.79
  recA Pseudomonas stutzeri DSM 10701

73.887

95.467

0.705
  recA Acinetobacter baylyi ADP1

72.647

96.317

0.7
  recA Acinetobacter baumannii D1279779

74.618

92.635

0.691
  recA Glaesserella parasuis strain SC1401

68.3

98.3

0.671
  recA Neisseria gonorrhoeae MS11

68.405

92.351

0.632
  recA Neisseria gonorrhoeae MS11

68.405

92.351

0.632
  recA Neisseria gonorrhoeae strain FA1090

68.405

92.351

0.632
  recA Ralstonia pseudosolanacearum GMI1000

71.061

88.102

0.626
  recA Streptococcus mitis SK321

60.286

99.15

0.598
  recA Streptococcus mitis NCTC 12261

60.286

99.15

0.598
  recA Streptococcus pneumoniae R6

59.77

98.584

0.589
  recA Streptococcus pneumoniae D39

59.77

98.584

0.589
  recA Streptococcus pneumoniae Rx1

59.77

98.584

0.589
  recA Streptococcus pneumoniae TIGR4

59.77

98.584

0.589
  recA Helicobacter pylori strain NCTC11637

61.424

95.467

0.586
  recA Helicobacter pylori 26695

61.128

95.467

0.584
  recA Streptococcus pyogenes NZ131

62.769

92.068

0.578
  recA Streptococcus mutans UA159

62.462

92.068

0.575
  recA Lactococcus lactis subsp. cremoris KW2

62.539

91.501

0.572
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.162

92.635

0.567
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

90.935

0.567
  recA Latilactobacillus sakei subsp. sakei 23K

61.538

92.068

0.567
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.94

94.051

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.748

90.935

0.552